From b9dff1bc51f91019c2fd647b713fb1f25adf2ce9 Mon Sep 17 00:00:00 2001 From: jrkirk61 Date: Thu, 23 Jan 2025 13:05:31 -0600 Subject: [PATCH] updates to text --- episodes/10-data-organisation.Rmd | 8 +++++++- episodes/25-starting-with-data.Rmd | 2 +- episodes/60-next-steps.Rmd | 7 ++++++- learners/setup.md | 9 +++++++++ 4 files changed, 23 insertions(+), 3 deletions(-) diff --git a/episodes/10-data-organisation.Rmd b/episodes/10-data-organisation.Rmd index 02a08b32..145c7cd7 100644 --- a/episodes/10-data-organisation.Rmd +++ b/episodes/10-data-organisation.Rmd @@ -1,6 +1,6 @@ --- source: Rmd -title: Data organisation with spreadsheets +title: Data organisation with spreadsheets (optional) teaching: 30 exercises: 30 --- @@ -27,6 +27,12 @@ exercises: 30 > This episode is based on the Data Carpentries's *Data Analysis and > Visualisation in R for Ecologists* lesson. + +### HPCBio Notes + +If you’re signed up for an HPCBio workshop, **this entire episode is optional**. There is no recording available for this episode, so please follow along with the text-based lesson below. + + ## Spreadsheet programs **Question** diff --git a/episodes/25-starting-with-data.Rmd b/episodes/25-starting-with-data.Rmd index 2d89d9ef..c8835a79 100644 --- a/episodes/25-starting-with-data.Rmd +++ b/episodes/25-starting-with-data.Rmd @@ -602,7 +602,7 @@ head(m) :::::::::::::::::::::::::::::::::::::::::::::::::: -## Formatting Dates +## Formatting Dates (optional) One of the most common issues that new (and experienced!) R users have is converting date and time information into a variable that is diff --git a/episodes/60-next-steps.Rmd b/episodes/60-next-steps.Rmd index 89511b1a..0d0bdd86 100644 --- a/episodes/60-next-steps.Rmd +++ b/episodes/60-next-steps.Rmd @@ -1,6 +1,6 @@ --- source: Rmd -title: Next steps +title: Next steps (optional) teaching: 45 exercises: 45 --- @@ -24,6 +24,11 @@ exercises: 45 :::::::::::::::::::::::::::::::::::::::::::::::::: +## HPCBio Notes + +If you're signed up for an HPCBio workshop, **this episode 7 is optional** but recommended reading if you're signed up for Traditional Bulk RNA-Seq Analysis. +There is no recording available for this episode, so please follow along with the text-based lesson below. + ## Next steps ```{r, echo=FALSE, message=FALSE} diff --git a/learners/setup.md b/learners/setup.md index 17c393de..19bdb401 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -161,3 +161,12 @@ install.packages(c("BiocManager", "remotes")) BiocManager::install(c("tidyverse", "SummarizedExperiment", "hexbin", "patchwork", "gridExtra", "lubridate")) ``` + +::::::::::::::::::::::::: + +## Additional HPCBio Resources + +If you are signed up for an HPCBio workshop, you will have additional resources that you can utilize that will be noted throughout the lessons. These resources are listed below. Make sure to confirm that you have access to both of them. If you're not signed up for an HPCBio workshop, then you will not have permission to access these. See our website for more workshop information [here](https://hpcbio.illinois.edu/hpcbio-workshops). + +1. **Slack Workshop Group:** You should have received an email with an invitation to join our *HPCBio Workshops* Slack page. Here you can ask HPCBio staff questions related to this material under the channel named **# intro-linux-swc**. +2. **Video Channel:** You should have also received an email containing a link to our video playlist. This includes recordings of HPCBio staff teaching this material if you prefer to listen and follow along with these materials rather than read through the lessons on your own.