Merge branch 'main' into bye-twitter

Author: tayden

.github/workflows/_conda-build.yml

@@ -43,30 +43,29 @@ jobs:
         if: github.ref_type == 'tag'
         run: sed -i "s/0.0.0/${{ env.tag }}/g" kelp_o_matic/__init__.py
 
-      - name: Setup Mambaforge
-        uses: conda-incubator/setup-miniconda@v3
+      - name: Setup Mamba
+        uses: mamba-org/setup-micromamba@v2
         with:
-          python-version: ${{ inputs.python-version }}
-          mamba-version: "*"
-          channels: pytorch,nvidia,conda-forge,defaults
-          channel-priority: true
-          auto-update-conda: true
-          activate-environment: my-env
-          miniforge-variant: Mambaforge
-          use-mamba: true
+          environment-name: build-env
+          create-args: >-
+            python=${{ inputs.python-version }}
+            rattler-build
+            anaconda-client
+            -c pytorch -c nvidia -c conda-forge
+          cache-downloads: true
+          cache-downloads-key: ${{ runner.os }}-${{ runner.arch }}-${{ env.CACHE_NUMBER }}
+          init-shell: bash
 
-      - name: Install build packages
-        run: mamba install -y boa anaconda-client
+      - name: Verify rattler-build installation
+        run: rattler-build --version
 
       - name: Build package
-        run: |
-          cd conda
-          conda mambabuild --output-folder . .
+        run: rattler-build build -r conda/recipe.yaml
 
       - name: Publish package
         if: inputs.should-upload
         env:
           ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
         run: |
-          cd conda
+          cd output
           anaconda upload --label main noarch/*.tar.bz2

.github/workflows/build-test.yml

@@ -14,7 +14,7 @@ jobs:
   build:
     strategy:
       matrix:
-          python-version: ["3.9", "3.10", "3.11"]
+          python-version: ["3.10", "3.11", "3.12", "3.13"]
           os: ["ubuntu-latest", "windows-latest"]
     uses: ./.github/workflows/_conda-build.yml
     with:

.github/workflows/test.yml

@@ -24,9 +24,10 @@ jobs:
           - Windows
           - MacOs
         py:
+          - "3.13"
+          - "3.12"
           - "3.11"
           - "3.10"
-          - "3.9"
     steps:
       - uses: actions/checkout@v4
       - name: Setup python for test ${{ matrix.py }}

.gitignore

@@ -275,3 +275,5 @@ conda/index.html
 .idea/
 
 *.profile
+
+output

.readthedocs.yaml

@@ -1,9 +1,9 @@
 version: 2
 
 build:
-  os: "ubuntu-20.04"
+  os: "ubuntu-24.04"
   tools:
-    python: "3.9"
+    python: "3.10"
 
 mkdocs:
   configuration: mkdocs.yml

conda/meta.yaml

@@ -0,0 +1,64 @@
+schema_version: 1
+
+context:
+  git_tag: ${{ env.get('GIT_DESCRIBE_TAG', default="v0.0.0") }}
+  version: ${{ git_tag[1:] }}
+
+package:
+  name: kelp-o-matic
+  version: ${{ version }}
+
+source:
+  path: ../
+
+build:
+  number: 0
+  noarch: python
+  script: ${{ PYTHON }} -m pip install . -vv
+  python:
+    entry_points:
+      - kom = kelp_o_matic.cli:cli
+
+requirements:
+  host:
+    - python >=3.10
+    - poetry-core
+    - pip
+  run:
+    - python >=3.10
+    - numpy >=1.24.2
+    - pytorch >=2.1.0, <3
+    - fsspec
+    - rasterio >=1.3.7, <2
+    - rich >=13.5, <14
+    - torchvision >=0.16.1
+    - typer >=0.9.0
+    - packaging >=24.1, <25
+  run_constraints:
+    - pytorch-cuda >=11.8
+
+tests:
+  - python:
+      imports:
+        - kelp_o_matic
+        - kelp_o_matic.geotiff_io
+  - requirements:
+      run:
+        - python >=3.10
+        - pip
+    script:
+      - pip check
+      - kom --help
+
+about:
+  summary: Segmentation Tools for Remotely Sensed RPAS Imagery
+  license: MIT
+  license_file: LICENSE.txt
+  homepage: https://github.com/HakaiInstitute/kelp-o-matic
+  repository: https://github.com/HakaiInstitute/kelp-o-matic
+  documentation: https://kelp-o-matic.readthedocs.io
+
+extra:
+  recipe-maintainers:
+    - tayden
+