From fbb5f36e63ee668d8b3ad7618d74bb5fd6814ed2 Mon Sep 17 00:00:00 2001
From: Josh Loecker <joshloecker@icloud.com>
Date: Wed, 8 Mar 2023 13:43:06 -0600
Subject: [PATCH] Update scipy version

---
 Dockerfile       | 2 +-
 environment.yaml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index f3d77160..692c545d 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -18,7 +18,7 @@ RUN conda config --quiet --add channels conda-forge \
     && conda config --quiet --add channels gurobi \
     # Remove python from pinned versions; this allows us to update python. From: https://stackoverflow.com/a/11245372 \
     && sed -i "s|^python .*||" /opt/conda/conda-meta/pinned \
-    && echo "HERE" && echo /opt/conda/conda-meta/pinned \
+    && echo "HERE" && cat /opt/conda/conda-meta/pinned \
     && mamba env update --quiet --name=base --file="${HOME}/environment.yaml" \
     && mamba clean --quiet --all --force-pkgs-dirs --yes \
     && R -e "devtools::install_github('babessell1/zFPKM')" \
diff --git a/environment.yaml b/environment.yaml
index 422c866b..91d18b4b 100644
--- a/environment.yaml
+++ b/environment.yaml
@@ -36,7 +36,7 @@ dependencies:
   - python==3.11.0
   - requests==2.28.1
   - rpy2==3.5.1
-  - scipy==1.8.1
+  - scipy==1.10.1
   - sqlalchemy==1.4.39
   - unidecode==1.3.4
   - xlrd==2.0.1