From 95b0257bf44337d63ccafe2cb85e821bc3eddb6a Mon Sep 17 00:00:00 2001 From: Johannes Hjorth Date: Thu, 15 Feb 2024 10:47:14 +0100 Subject: [PATCH] Updated --- .../GPe/intrapallidal_projections.json | 52 +++++++++---------- .../GPe/pallidostriatal_projections.json | 28 +++++----- .../GPe/striatopallidal_projections.json | 15 +++--- 3 files changed, 46 insertions(+), 49 deletions(-) diff --git a/data/connectivity/GPe/intrapallidal_projections.json b/data/connectivity/GPe/intrapallidal_projections.json index 621f7d03..dd016ff7 100644 --- a/data/connectivity/GPe/intrapallidal_projections.json +++ b/data/connectivity/GPe/intrapallidal_projections.json @@ -1,67 +1,63 @@ { "PV,PV" : { "projection" : { - "file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json" + "file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "presynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/PV_GPe_4.swc", - "$SNUDDA_DATA/connectivity/axons/PV_GPe_3.swc", - "$SNUDDA_DATA/connectivity/axons/PV_GPe_2.swc", - "$SNUDDA_DATA/connectivity/axons/PV_GPe_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_3.swc", + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_4.swc" ] }, "PV,FoxP2" : { "projection" : { - "file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json" + "file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "presynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/PV_GPe_4.swc", - "$SNUDDA_DATA/connectivity/axons/PV_GPe_3.swc", - "$SNUDDA_DATA/connectivity/axons/PV_GPe_2.swc", - "$SNUDDA_DATA/connectivity/axons/PV_GPe_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_3.swc", + "$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_4.swc" ] }, "FoxP2,FoxP2" : { "projection" : { - "file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json" + "file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "presynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_4.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_3.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_2.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_3.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_4.swc" ] }, "FoxP2,PV" : { "projection" : { - "file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json" + "file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "presynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_4.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_3.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_2.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_3.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_4.swc" ] } - - - - } diff --git a/data/connectivity/GPe/pallidostriatal_projections.json b/data/connectivity/GPe/pallidostriatal_projections.json index d69661e7..a5404b01 100644 --- a/data/connectivity/GPe/pallidostriatal_projections.json +++ b/data/connectivity/GPe/pallidostriatal_projections.json @@ -1,46 +1,46 @@ { "FoxP2,dSPN" : { "projection" : { - "file" : "$SNUDDA_DATA/connectivity/projection/pallidostriatal_map.json" + "file" : "$SNUDDA_DATA/connectivity/GPe/projection/pallidostriatal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "presynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_3.swc" ] }, "FoxP2,iSPN" : { "projection" : { - "file" : "$SNUDDA_DATA/connectivity/projection/pallidostriatal_map.json" + "file" : "$SNUDDA_DATA/connectivity/GPe/projection/pallidostriatal_map.json" }, "rotation" : { "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", "mapping" : "presynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_3.swc" ] }, "FoxP2,FS" : { "projection" : { - "file" : "$SNUDDA_DATA/connectivity/projection/pallidostriatal_map.json" + "file" : "$SNUDDA_DATA/connectivity/GPe/projection/pallidostriatal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "presynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_3.swc" ] } } diff --git a/data/connectivity/GPe/striatopallidal_projections.json b/data/connectivity/GPe/striatopallidal_projections.json index e47a23b8..9eab9638 100644 --- a/data/connectivity/GPe/striatopallidal_projections.json +++ b/data/connectivity/GPe/striatopallidal_projections.json @@ -4,13 +4,13 @@ "file" : "$SNUDDA_DATA/connectivity/GPe/projection/striatopallidal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "postsynaptic" }, "morphology" : [ - "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_3.swc", + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_1.swc", "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_2.swc", - "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_3.swc" ] }, @@ -19,13 +19,14 @@ "file" : "$SNUDDA_DATA/connectivity/projection/striatopallidal_map.json" }, "rotation" : { - "file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json", + "file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json", "mapping" : "postsynaptic" }, "morphology" : [ - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc", - "$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc" + "$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_1.swc", + "$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_2.swc", + "$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_3.swc", + "$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_4.swc" ] } }