-
Notifications
You must be signed in to change notification settings - Fork 0
/
index.html
202 lines (167 loc) · 9.81 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
<!DOCTYPE HTML>
<html lang="en">
<head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>Wei Zhang</title>
<meta name="author" content="Wei Zhang">
<meta name="viewport" content="width=device-width, initial-scale=1">
<link rel="stylesheet" type="text/css" href="stylesheet.css">
<link rel="icon" type="image/png" href="images/Master-Ball.png">
</head>
<body>
<table style="width:100%;max-width:800px;border:0px;border-spacing:0px;border-collapse:separate;margin-right:auto;margin-left:auto;"><tbody>
<tr style="padding:0px">
<td style="padding:0px">
<table style="width:100%;border:0px;border-spacing:0px;border-collapse:separate;margin-right:auto;margin-left:auto;">
<tbody>
<tr style="padding:0px">
<td style="padding:2.5%;width:70%;vertical-align:middle">
<p style="text-align:center">
<name>Wei Zhang</name>
</p>
<p> I am currently a postdoctoral fellow at <a href="http://en.control.sdu.edu.cn/index.htm">the School of Control Science and Engineering</a>,
<a href="https://www.sdu.edu.cn/">Shandong University</a>.
My cooperation mentor is <a href="https://scholar.google.com/citations?user=zkBXb_kAAAAJ&hl=en">Prof. Zhiping Liu</a>. I received my Bachelor's degree from the
<a href="https://www.uestc.edu.cn/">University of Electronic Science and Technology of China</a> in 2016. In 2022, I obtained my Ph.D. degree in control
science and engineering under the guidance of <a href="https://scholar.google.com/citations?user=ygzAmSAAAAAJ&hl=en">Prof. Yanda Li</a>
and <a href="https://scholar.google.com/citations?user=r0KzDh8AAAAJ&hl=en">Prof. Xiaowo Wang</a> from <a href="https://www.tsinghua.edu.cn/">Tsinghua University</a>.
</p>
<p style="text-align:center">
<a href="mailto:zw@sdu.edu.cn">Email</a>  / 
<a href="https://scholar.google.com/citations?hl=en&user=iVFuIA8AAAAJ">Google Scholar</a>  / 
<a href="https://github.com/Honchkrow">Github</a>
</p>
</td>
<td style="padding:2.5%;width:30%;max-width:40%">
<a href="images/Zhangwei.jpg"><img style="width:100%;max-width:100%" alt="profile photo" src="images/Zhangwei.jpg" class="hoverZoomLink"></a>
</td>
</tr>
</tbody>
</table>
<table style="width:100%;border:0px;border-spacing:0px;border-collapse:separate;margin-right:auto;margin-left:auto;">
<tbody>
<tr>
<td style="padding:20px;width:100%;vertical-align:middle">
<heading>Research Interests</heading>
<p> My research is in the area of computational biology and bioinformatics. I am engrossed in revealing the regulatory mechanism behind diseases
with machine learning methods. I am also interested in developing algorithms and software to detect early cancer signals.
I have developed several toolkits like
<a href="https://bioconductor.org/packages/release/bioc/html/esATAC.html">esATAC</a>,
<a href="https://xwanglabthu.github.io/ARIC/">ARIC</a> as well as <a href="https://xwanglabthu.github.io/cfDNApipe/">cfDNApipe</a>.
</p>
</td>
</tr>
</tbody>
</table>
<table style="width:100%;border:0px;border-spacing:0px;border-collapse:separate;margin-right:auto;margin-left:auto;">
<tbody>
<tr>
<td style="padding:20px;width:100%;vertical-align:middle">
<heading>Publications</heading>
</td>
</tr>
</tbody>
</table>
<table style="width:100%;border:0px;border-spacing:0px;border-collapse:separate;margin-right:auto;margin-left:auto;">
<tbody>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>Deep generative modeling and clustering of single cell Hi-C data</papertitle>
<br>
Q Liu, W Zeng, <strong>W Zhang</strong>, S Wang, H Chen, R Jiang, M Zhou, S Zhang
<br>
<em>Briefings in Bioinformatics</em>, 2023 <br>
</td>
</tr>
<table style="width:100%;border:0px;border-spacing:0px;border-collapse:separate;margin-right:auto;margin-left:auto;">
<tbody>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA</papertitle>
<br>
Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, <strong>Wei Zhang</strong>, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang
<br>
<em>Briefings in Bioinformatics</em>, 2022 <br>
</td>
</tr>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data</papertitle>
<br>
<strong>W Zhang</strong>, H Xu, R Qiao, B Zhong, X Zhang, J Gu, X Zhang, L Wei, X Wang
<br>
<em>Briefings in Bioinformatics</em>, 2021 <br>
</td>
</tr>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>Genome-wide cell-free DNA methylation analyses improve accuracy of non-invasive diagnostic imaging for early-stage breast cancer</papertitle>
<br>
Jiaqi Liu, Hengqiang Zhao, Yukuan Huang, Shouping Xu, Yan Zhou, <strong>Wei Zhang</strong>, Jiaqi Li, Yue Ming, Xinyu Wang, Sen Zhao, Kai Li, Xiying Dong, Yunlong Ma, Tianyi Qian, Xinyi Chen, Zeyu Xing, Yan Zhang, Hongyan Chen, Zhihua Liu, Da Pang, Meng Zhou, Zhihong Wu, Xiaowo Wang, Xiang Wang, Nan Wu, Jianzhong Su
<br>
<em>Molecular cancer</em>, 2021 <br>
</td>
</tr>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data</papertitle>
<br>
<strong>Wei Zhang</strong>, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang
<br>
<em>Bioinformatics</em>, 2021 <br>
</td>
</tr>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads</papertitle>
<br>
J Li, L Wei, X Zhang, <strong>W Zhang</strong>, H Wang, B Zhong, Z Xie, H Lv, X Wang
<br>
<em>Briefings in bioinformatics</em>, 2021 <br>
</td>
</tr>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis</papertitle>
<br>
Z Wei, <strong>W Zhang</strong>, H Fang, Y Li, X Wang
<br>
<em>Bioinformatics</em>, 2018 <br>
</td>
</tr>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>SIP: An Interchangeable Pipeline for scRNA-seq Data Processing</papertitle>
<br>
Sijie Chen, Zheng Wei, Yang Chen, Kui Hua, <strong>Wei Zhang</strong>, Changyi Liu, Haoxiang Gao, Hao Sun, Zhenyi Wang, Qijin Yin, Shengquan Chen, Shaoming Song, Chen Feng, Hairong Lu, Rui Jiang, Xiaowo Wang, Jin Gu, Xuegong Zhang
<br>
<em>bioRxiv</em>, 2018 <br>
</td>
</tr>
<tr onmouseout="dualpixel_stop()" onmouseover="dualpixel_start()">
<td style="padding:20px;width:75%;vertical-align:middle">
<papertitle>HCSGD: an integrated database of human cellular senescence genes</papertitle>
<br>
Q Dong, H Han, X Liu, L Wei, <strong>W Zhang</strong>, Z Zhao, MQ Zhang, X Wang
<br>
<em>Journal of Genetics and Genomics</em>, 2017 <br>
</td>
</tr>
</tbody>
</table>
<table style="width:100%;border:0px;border-spacing:0px;border-collapse:separate;margin-right:auto;margin-left:auto;">
<tbody>
<tr>
<td style="padding:0px">
<br>
<p style="text-align:right;font-size:small;">
Template from <a href="https://jonbarron.info">Jon Barron</a>.
</p>
</td>
</tr>
</tbody>
</table>
</td>
</tr>
</table>
</body>
</html>