Automated Selection of High quality Libraries for the Extensive analYsis of Strandseq data (ASHLEYS)
Create features for bam files for a given window size
Train a new classification model based on an annotation file specifying class 1 cells. The model is trained with gradient boosting based on grid search on hyperparamters.
Predict the class probabilities for new cells based on pre-trained models or based on customized models.