From 94822301435d66921801e3a29e68103838670691 Mon Sep 17 00:00:00 2001 From: Ziv Yaniv Date: Fri, 12 Jul 2024 20:37:12 +0000 Subject: [PATCH] Adding converted markdowns. --- docs/publications.md | 62 +++++++++++++++++++++++++++++++++----------- 1 file changed, 47 insertions(+), 15 deletions(-) diff --git a/docs/publications.md b/docs/publications.md index a7d00ac..8e71ac2 100644 --- a/docs/publications.md +++ b/docs/publications.md @@ -44,6 +44,27 @@ Menna R. Clatworthy](mailto:d.withers@bham.ac.uk,mrc38@medschl.cam.ac.uk)\] \[4\] +H. Ichise, E. Speranza, F. La +Russa, T. Z. Veres, C. J. Chu, A. Gola, and R. N. Germain, “Rebalancing +viral and immune damage versus tissue repair prevents death from lethal +influenza infection,” *bioRxiv*, 2024, doi: +[10.1101/2024.07.04.601620](https://doi.org/10.1101/2024.07.04.601620). + \[Corresponding authors: [Hiroshi Ichise, +Ronald N. +Germain](mailto:hiroshi.ichise@nih.gov,rgermain@niaid.nih.gov)\] + +\[5\] +A. Shapiro, N. W. S. Caballes, R. +N. Vera, B. S. Klein, P. J. Brennan, Y.-F. Wu, and D. L. Wiesner, +“Sensitization with Fungal Protease Allergen +Establishes Long-Lived, Allergenic Th Cell Memory in the Lung,” +*The Journal of Immunology*, vol. 212, no. 9, pp. 1420–1427, Mar. 2024, +doi: +[10.4049/jimmunol.2300694](https://doi.org/10.4049/jimmunol.2300694). + \[Corresponding authors: [Darin L. +Wiesner](mailto:dw667@rutgers.edu)\] + +\[6\] E. M. Quardokus, D. C. Saunders, E. McDonough, J. W. Hickey, C. Werlein, C. Surrette, P. Rajbhandari, A. M. Casals, H. Tian, L. Lowery, E. K. Neumann, F. Björklund, T. V. @@ -59,7 +80,18 @@ pp. 1174–1178, 2023, doi: \[Corresponding authors: [Andrea J. Radtke](mailto:andrea.radtke@nih.gov)\] -\[5\] +\[7\] +A.-M. Globig, S. Zhao, J. +Roginsky, V. I. Maltez, J. Guiza, N. Avina-Ochoa, M. Heeg, F. Araujo +Hoffmann, O. Chaudhary, J. Wang, G. Senturk, D. Chen, C. O’Connor, S. +Pfaff, R. N. Germain, K. A. Schalper, B. Emu, and S. M. Kaech, “The +*β*1-adrenergic receptor links sympathetic nerves to Tcell +exhaustion,” *Nature*, vol. 622, no. 7982, pp. 383–392, Oct. 2023, doi: +[10.1038/s41586-023-06568-6](https://doi.org/10.1038/s41586-023-06568-6). + \[Corresponding authors: [Susan M. +Kaech](mailto:skaech@salk.edu)\] + +\[8\] J. Gu, A. Iyer, B. Wesley, A. Taglialatela, G. Leuzzi, S. Hangai, A. Decker, R. Gu, N. Klickstein, Y. Shuai, K. Jankovic, L. Parker-Burns, Y. Jin, J. Y. Zhang, J. Hong, S. @@ -70,7 +102,7 @@ multi-omic phenotypes in cells and tissue,” *bioRxiv*, 2023, doi: \[Corresponding authors: [Jellert T. Gaublomme](mailto:jg4106@columbia.edu)\] -\[6\] +\[9\] L. Arakkal, “IBEX: A user-friendly and open-source solution for high-plex immunostaining,” *Nat Rev Immunol*, 2023, doi: @@ -78,7 +110,7 @@ Immunol*, 2023, doi: \[Corresponding authors: [Leanne Arakkal](mailto:leanne.arakkal@nih.gov)\] -\[7\] +\[10\] N. Yayon, V. R. Kedlian, L. Boehme, C. Suo, B. Wachter, R. T. Beuschel, O. Amsalem, K. Polanski, S. Koplev, E. Tuck, E. Dann, J. V. Hulle, S. Perera, T. Putteman, A. V. @@ -95,7 +127,7 @@ spatial human thymus cell atlas mapped to a continuous tissue axis,” Andrea J. Radtke, John C. Marioni, Tom Taghon, Sarah A. Teichmann](mailto:ronald.germain@nih.gov,andrea.radtke@nih.gov,marioni@ebi.ac.uk,tom.taghon@ugent.be,st9@sanger.ac.uk)\] -\[8\] +\[11\] Q. Xu, P. Milanez-Almeida, A. J. Martins, A. J. Radtke, K. B. Hoehn, C. Oguz, J. Chen, C. Liu, J. Tang, G. Grubbs, S. Stein, S. Ramelli, J. Kabat, H. Behzadpour, M. Karkanitsa, @@ -112,7 +144,7 @@ vol. 24, no. 1, pp. 186–199, 2023, doi: Schwartzberg, Kalpana Manthiram](mailto:pams@nih.gov,kalpana.manthiram@nih.gov)\] -\[9\] +\[12\] T. Kudo, A. M. Meireles, R. Moncada, Y. Chen, P. Wu, J. Gould, X. Hu, O. Kornfeld, R. Jesudason, C. Foo, B. Höckendorf, H. C. Bravo, J. P. Town, R. Wei, A. Rios, V. @@ -125,7 +157,7 @@ tissues with PerturbView,” *bioRxiv*, 2023, doi: \[Corresponding authors: [Aviv Regev, Eric Lubeck](mailto:regeva@gene.com,lubecke@gene.com)\] -\[10\] +\[13\] J. W. Hickey, E. K. Neumann, A. J. Radtke, J. M. Camarillo, R. T. Beuschel, A. Albanese, E. McDonough, J. Hatler, A. E. Wiblin, J. Fisher, J. Croteau, E. C. Small, A. Sood, R. M. @@ -139,7 +171,7 @@ Methods*, vol. 19, no. 2, pp. 284–295, 2022, doi: Sinem K. Saka](mailto:andrea.radtke@nih.gov,sinem.saka@embl.de)\] -\[11\] +\[14\] N. Richoz, Z. K. Tuong, K. W. Loudon, E. Patiño-Martínez, J. R. Ferdinand, A. Portet, K. R. Bashant, E. Thevenon, F. Rucci, T. Hoyler, T. Junt, M. J. Kaplan, R. M. Siegel, @@ -151,7 +183,7 @@ no. 21, p. e159751, 2022, doi: Menna R. Clatworthy](mailto:richard.siegel@novartis.com,mrc38@cam.ac.uk)\] -\[12\] +\[15\] A. J. Radtke, C. J. Chu, Z. Yaniv, L. Yao, J. Marr, R. T. Beuschel, H. Ichise, A. Gola, J. Kabat, B. Lowekamp, E. Speranza, J. Croteau, N. Thakur, D. Jonigk, J. Davis, J. M. @@ -163,7 +195,7 @@ chemical bleaching method for high-content imaging of diverse tissues,” Ronald N. Germain](mailto:andrea.radtke@nih.gov,ronald.germain@nih.gov)\] -\[13\] +\[16\] A. J. Radtke, E. Postovalova, A. Varlamova, A. Bagaev, M. Sorokina, O. Kudryashova, M. Meerson, M. Polyakova, I. Galkin, V. Svekolkin, S. Isaev, G. Perelman, Y. Lozinsky, @@ -178,7 +210,7 @@ multiomic atlas of human normal and follicular lymphoma lymph nodes,” \[Corresponding authors: [Andrea J. Radtke](mailto:andrea.radtke@nih.gov)\] -\[14\] +\[17\] E. Madissoon, A. J. Oliver, V. Kleshchevnikov, A. Wilbrey-Clark, K. Polanski, A. R. Orsi, L. Mamanova, L. Bolt, N. Richoz, R. Elmentaite, J. P. Pett, N. Huang, P. He, M. @@ -192,7 +224,7 @@ lung reveals a novel immune cell survival niche,” *bioRxiv*, 2021, doi: Kerstin B. Meyer](mailto:st9@sanger.ac.uk,km16@sanger.ac.uk)\] -\[15\] +\[18\] Z. K. Tuong, K. W. Loudon, B. Berry, N. Richoz, J. Jones, X. Tan, Q. Nguyen, A. George, S. Hori, S. Field, A. G. Lynch, K. Kania, P. Coupland, A. Babbage, R. Grenfell, T. @@ -205,7 +237,7 @@ p. 110132, 2021, doi: R. Clatworthy](mailto:cem45@hutchison-mrc.cam.ac.uk,mrc38@cam.ac.uk)\] -\[16\] +\[19\] C. R. Stoltzfus, J. Filipek, B. H. Gern, B. E. Olin, J. M. Leal, Y. Wu, M. R. Lyons-Cohen, J. Y. Huang, C. L. Paz-Stoltzfus, C. R. Plumlee, T. Pöschinger, K. B. Urdahl, M. Perro, @@ -216,7 +248,7 @@ no. 3, p. 107523, 2020, doi: \[Corresponding authors: [Michael Y. Gerner](mailto:gernermy@uw.edu)\] -\[17\] +\[20\] A. Gola, M. G. Dorrington, E. Speranza, C. Sala, R. M. Shih, A. J. Radtke, H. S. Wong, A. P. Baptista, J. M. Hernandez, G. Castellani, I. D. C. Fraser, and R. N. Germain, @@ -226,7 +258,7 @@ J. M. Hernandez, G. Castellani, I. D. C. Fraser, and R. N. Germain, \[Corresponding authors: [Anita Gola, Ronald N. Germain](mailto:anitagola2@gmail.com,ronald.germain@nih.gov)\] -\[18\] +\[21\] A. J. Radtke, E. Kandov, B. Lowekamp, E. Speranza, C. J. Chu, A. Gola, N. Thakur, R. Shih, L. Yao, Z. R. Yaniv, R. T. Beuschel, J. Kabat, J. Croteau, J. Davis, J. M. @@ -239,7 +271,7 @@ vol. 117, no. 52, pp. 33455–33465, 2020, doi: Ronald N. Germain](mailto:andrea.radtke@nih.gov,ronald.germain@nih.gov)\] -\[19\] +\[22\] E. Speranza, J. N. Purushotham, J. R. Port, B. Schwarz, M. Flagg, B. N. Williamson, F. Feldmann, M. Singh, L. Pérez-Pérez, G. L. Sturdevant, L. M. Roberts, A. Carmody, J. E.