Skip to content

Latest commit

 

History

History
19 lines (13 loc) · 736 Bytes

README.md

File metadata and controls

19 lines (13 loc) · 736 Bytes

parPE steadystate example

This directory contains file to generate a simple parameter estimation problem and some Jupyter notebooks to demonstrate basic parPE usage.

  • parpeExampleSteadystateBasic.ipynb describes the parameter estimation problem and demonstrates basic parPE usage

  • parpeExampleSteadystateHierarchical.ipynb demonstrates the hierarchical optimization approach implemented in parPE

  • parpeExampleSteadystateMinibatch.ipynb demonstrates the use of mini-batch optimization implemented in parPE

The example problem is generated by

  • createSteadystateExampleSBML.py: Create SBML model from scratch
  • create_steadystate_amici_model.py: Create example artificial measurements and other PEtab files