index.md

title
Catalog of IDR images formatted as OME-NGFF

<script type="application/ld+json"> { "@context": "http://schema.org", "@type": "DataCatalog", "inLanguage": "en-US", "name": "IDR OME-NGFF Samples", "publisher": { "@type": "Organization", "name": "GitHub" }, "copyrightYear": "2022", "discussionUrl": "https://github.com/IDR/ome-ngff-samples/issues", "accessMode": "visual", "measurementTechnique": "microscopy" } </script> <style> .page-content .wrapper { box-sizing: border-box; width: 100%; max-width: 100%; } .dataTables_scrollHeadInner { margin: 0 auto; } .icon { width: 24px; height: 24px; } .icon.vizarr { width: 27px; } .no_border { border: none; background: none; padding: 0; } .shake { animation: 0.1s linear 0s infinite alternate seesaw; } @-webkit-keyframes seesaw { from { transform: rotate(-0.05turn) } to { transform: rotate(0.05turn); } } @keyframes seesaw { from { transform: rotate(-0.05turn) } to { transform: rotate(0.05turn); } } </style> {% assign s3key = "EMBL-EBI bucket (current)" %} {% assign studykey = "Study" %} {% for rec in site.data.table %} {% capture image_name %}{{ rec.[s3key] | split: "/" | last }}{% endcapture %} {% capture image_id %}{{ image_name | split: "." | first}}{% endcapture %} {% endfor %}

OME-NGFF version	Thumbnail	EMBL-EBI S3 key	SizeX	SizeY	SizeZ	SizeC	SizeT	Axes	Wells	Fields	Keywords	License	Study	DOI	Date added
{{ rec["OME-NGFF version"] }}		{{ image_name }} {% if rec['Wells'] or rec['Keywords'] != "bioformats2raw.layout" %} {% endif %} {% unless rec['Wells'] %} {% unless rec["OME-NGFF version"] == "0.1" or rec["OME-NGFF version"] == "0.2" or rec["OME-NGFF version"] == "0.3" %} {% endunless %} {% endunless %}	{{ rec.["SizeX"] }}	{{ rec.["SizeY"] }}	{{ rec.["SizeZ"] }}	{{ rec.["SizeC"] }}	{{ rec.["SizeT"] }}	{{ rec.["Axes"] }}	{{ rec.["Wells"] }}	{{ rec.["Fields"] }}	{{ rec.["Keywords"] }}	{{ rec.["License"] }}	{{ rec.["Study"] }} {% if rec["Wells"] %} {% else %} {% endif %}	{{ rec.["DOI"] }}	{{ rec.["Date added"] }}

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