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ucscxenatools installation info need to be updated #1

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ShixiangWang opened this issue Oct 29, 2024 · 0 comments

ShixiangWang commented Oct 29, 2024

@DongqiangZeng0808

The UCSCXenaTools has been updated to match the recent update of UCSC Xena data hubs. Some of the content on the page https://iobr.github.io/book/rna-data-preprocessing.html#download-rnaseq-data-using-ucscxenatools need be updated to make it work.

Specifically,

if (!requireNamespace("UCSCXenaTools", quietly = TRUE))  
  BiocManager::install("UCSCXenaTools")

updated to

if (!requireNamespace("UCSCXenaTools", quietly = TRUE))  
  BiocManager::install("ropensci/UCSCXenaTools")

The text was updated successfully, but these errors were encountered:

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