CreateNextflowPipeline.md

icasdk.model.create_nextflow_pipeline.CreateNextflowPipeline

Model Type Info

Input Type	Accessed Type	Description	Notes
dict, frozendict.frozendict,	frozendict.frozendict,

Dictionary Keys

Key	Input Type	Accessed Type	Description	Notes
parametersXmlFile	bytes, io.FileIO, io.BufferedReader,	bytes, FileIO,
code	str,	str,	The code of the pipeline
mainNextflowFile	bytes, io.FileIO, io.BufferedReader,	bytes, FileIO,	The main Nextflow file.
description	str,	str,	The description of the pipeline
analysisStorageId	str, uuid.UUID,	str,	The id of the storage to use for the pipeline.	value must be a uuid
pipelineLanguageVersionId	None, str, uuid.UUID,	NoneClass, str,	The id of the Nextflow version to use for the pipeline.	[optional] value must be a uuid
nextflowConfigFile	bytes, io.FileIO, io.BufferedReader,	bytes, FileIO,	The Nextflow config file.	[optional]
otherNextflowFiles	list, tuple,	tuple,		[optional]
metadataModelFile	None, bytes, io.FileIO, io.BufferedReader,	NoneClass, bytes, FileIO,	The metadata model json file(contents can be retrieved from the controlplane).	[optional]
links	Links	Links		[optional]
versionComment	None, str,	NoneClass, str,		[optional]
categories	list, tuple, None,	tuple, NoneClass,		[optional]
htmlDocumentation	None, str,	NoneClass, str,		[optional]
any_string_name	dict, frozendict.frozendict, str, date, datetime, int, float, bool, decimal.Decimal, None, list, tuple, bytes, io.FileIO, io.BufferedReader	frozendict.frozendict, str, BoolClass, decimal.Decimal, NoneClass, tuple, bytes, FileIO	any string name can be used but the value must be the correct type	[optional]

otherNextflowFiles

Model Type Info

Input Type	Accessed Type	Description	Notes
list, tuple,	tuple,

Tuple Items

Class Name	Input Type	Accessed Type	Description	Notes
items	bytes, io.FileIO, io.BufferedReader,	bytes, FileIO,	Other Nextflow files referenced from the main Nextflow file.

categories

Model Type Info

Input Type	Accessed Type	Description	Notes
list, tuple, None,	tuple, NoneClass,

Tuple Items

Class Name	Input Type	Accessed Type	Description	Notes
items	None, str,	NoneClass, str,

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