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session_info.txt
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session_info.txt
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setting value
version R version 3.4.4 (2018-03-15)
os Windows 7 x64 SP 1
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United Kingdom.1252
tz Europe/London
date 2018-07-17
package ondiskversion loadedversion path attached is_base date source
abind 1.4.5 1.4-5 C:/Users/ngreen1/Documents/R/win-library/3.4/abind FALSE FALSE 2016-07-21 CRAN (R 3.4.1)
arm 1.9.3 1.9-3 C:/Users/ngreen1/Documents/R/win-library/3.4/arm FALSE FALSE 2016-11-27 CRAN (R 3.4.1)
assertthat 0.2.0 0.2.0 C:/Users/ngreen1/Documents/R/win-library/3.4/assertthat TRUE FALSE 2017-04-11 CRAN (R 3.4.1)
bayesm 3.1.0.1 3.1-0.1 C:/Users/ngreen1/Documents/R/win-library/3.4/bayesm FALSE FALSE 2017-07-21 CRAN (R 3.4.3)
BCEA 2.2.5 2.2-5 C:/Users/ngreen1/Documents/R/win-library/3.4/BCEA TRUE FALSE 2016-11-18 CRAN (R 3.4.1)
bindr 0.1.1 0.1.1 C:/Users/ngreen1/Documents/R/win-library/3.4/bindr FALSE FALSE 2018-03-13 CRAN (R 3.4.4)
bindrcpp 0.2 0.2 C:/Users/ngreen1/Documents/R/win-library/3.4/bindrcpp FALSE FALSE 2017-06-17 CRAN (R 3.4.3)
boot 1.3.20 1.3-20 C:/Program Files/R/R-3.4.4/library/boot FALSE FALSE 2017-08-06 CRAN (R 3.4.4)
brew 1.0.6 1.0-6 C:/Users/ngreen1/Documents/R/win-library/3.4/brew FALSE FALSE 2011-04-13 CRAN (R 3.4.1)
cellranger 1.1.0 1.1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/cellranger FALSE FALSE 2016-07-27 CRAN (R 3.4.1)
clisymbols 1.2.0 1.2.0 C:/Users/ngreen1/Documents/R/win-library/3.4/clisymbols FALSE FALSE 2018-04-18 Github (gaborcsardi/clisymbols@e49b4f5)
cmprsk 2.2.7 2.2-7 C:/Users/ngreen1/Documents/R/win-library/3.4/cmprsk TRUE FALSE 2014-06-17 CRAN (R 3.4.1)
coda 0.19.1 0.19-1 C:/Users/ngreen1/Documents/R/win-library/3.4/coda FALSE FALSE 2016-12-08 CRAN (R 3.4.1)
colorspace 1.3.2 1.3-2 C:/Users/ngreen1/Documents/R/win-library/3.4/colorspace FALSE FALSE 2016-12-14 CRAN (R 3.4.1)
commonmark 1.4 1.4 C:/Users/ngreen1/Documents/R/win-library/3.4/commonmark FALSE FALSE 2017-09-01 CRAN (R 3.4.1)
compositions 1.40.1 1.40-1 C:/Users/ngreen1/Documents/R/win-library/3.4/compositions FALSE FALSE 2014-06-07 CRAN (R 3.4.3)
crayon 1.3.4 1.3.4 C:/Users/ngreen1/Documents/R/win-library/3.4/crayon TRUE FALSE 2017-09-16 CRAN (R 3.4.1)
data.table 1.10.4.3 1.10.4-3 C:/Users/ngreen1/Documents/R/win-library/3.4/data.table TRUE FALSE 2017-10-27 CRAN (R 3.4.2)
data.tree 0.7.5 0.7.5 C:/Users/ngreen1/Documents/R/win-library/3.4/data.tree TRUE FALSE 2018-06-08 Github (gluc/data.tree@aec0bcc)
denstrip 1.5.4 1.5.4 C:/Users/ngreen1/Documents/R/win-library/3.4/denstrip TRUE FALSE 2018-03-18 CRAN (R 3.4.4)
DEoptimR 1.0.8 1.0-8 C:/Users/ngreen1/Documents/R/win-library/3.4/DEoptimR FALSE FALSE 2016-11-19 CRAN (R 3.4.1)
deSolve 1.20 1.20 C:/Users/ngreen1/Documents/R/win-library/3.4/deSolve FALSE FALSE 2017-07-14 CRAN (R 3.4.1)
devtools 1.13.5 1.13.5 C:/Users/ngreen1/Documents/R/win-library/3.4/devtools FALSE FALSE 2018-02-18 CRAN (R 3.4.3)
DiagrammeR 1.0.0 1.0.0 C:/Users/ngreen1/Documents/R/win-library/3.4/DiagrammeR FALSE FALSE 2018-03-01 CRAN (R 3.4.3)
digest 0.6.15 0.6.15 C:/Users/ngreen1/Documents/R/win-library/3.4/digest FALSE FALSE 2018-01-28 CRAN (R 3.4.3)
downloader 0.4 0.4 C:/Users/ngreen1/Documents/R/win-library/3.4/downloader FALSE FALSE 2015-07-09 CRAN (R 3.4.1)
dplyr 0.7.4 0.7.4 C:/Users/ngreen1/Documents/R/win-library/3.4/dplyr TRUE FALSE 2017-09-28 CRAN (R 3.4.2)
energy 1.7.2 1.7-2 C:/Users/ngreen1/Documents/R/win-library/3.4/energy FALSE FALSE 2017-09-14 CRAN (R 3.4.3)
flexsurv 1.1 1.1 C:/Users/ngreen1/Documents/R/win-library/3.4/flexsurv TRUE FALSE 2017-03-27 CRAN (R 3.4.3)
GGally 1.3.2 1.3.2 C:/Users/ngreen1/Documents/R/win-library/3.4/GGally FALSE FALSE 2017-08-02 CRAN (R 3.4.1)
ggplot2 2.2.1 2.2.1 C:/Users/ngreen1/Documents/R/win-library/3.4/ggplot2 TRUE FALSE 2016-12-30 CRAN (R 3.4.1)
ggtern 2.2.1 2.2.1 C:/Users/ngreen1/Documents/R/win-library/3.4/ggtern FALSE FALSE 2017-07-17 CRAN (R 3.4.3)
git2r 0.21.0 0.21.0 C:/Users/ngreen1/Documents/R/win-library/3.4/git2r FALSE FALSE 2018-01-04 CRAN (R 3.4.3)
glue 1.2.0 1.2.0 C:/Users/ngreen1/Documents/R/win-library/3.4/glue FALSE FALSE 2017-10-29 CRAN (R 3.4.2)
gridExtra 2.3 2.3 C:/Users/ngreen1/Documents/R/win-library/3.4/gridExtra FALSE FALSE 2017-09-09 CRAN (R 3.4.1)
gtable 0.2.0 0.2.0 C:/Users/ngreen1/Documents/R/win-library/3.4/gtable FALSE FALSE 2016-02-26 CRAN (R 3.4.1)
hms 0.4.2 0.4.2 C:/Users/ngreen1/Documents/R/win-library/3.4/hms FALSE FALSE 2018-03-10 CRAN (R 3.4.3)
htmltools 0.3.6 0.3.6 C:/Users/ngreen1/Documents/R/win-library/3.4/htmltools FALSE FALSE 2017-04-28 CRAN (R 3.4.1)
htmlwidgets 1.0 1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/htmlwidgets FALSE FALSE 2018-01-20 CRAN (R 3.4.3)
igraph 1.2.1 1.2.1 C:/Users/ngreen1/Documents/R/win-library/3.4/igraph FALSE FALSE 2018-03-10 CRAN (R 3.4.3)
influenceR 0.1.0 0.1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/influenceR FALSE FALSE 2015-09-03 CRAN (R 3.4.1)
jsonlite 1.5 1.5 C:/Users/ngreen1/Documents/R/win-library/3.4/jsonlite FALSE FALSE 2017-06-01 CRAN (R 3.4.1)
latex2exp 0.4.0 0.4.0 C:/Users/ngreen1/Documents/R/win-library/3.4/latex2exp FALSE FALSE 2015-11-30 CRAN (R 3.4.3)
lattice 0.20.35 0.20-35 C:/Program Files/R/R-3.4.4/library/lattice FALSE FALSE 2017-03-25 CRAN (R 3.4.4)
lazyeval 0.2.1 0.2.1 C:/Users/ngreen1/Documents/R/win-library/3.4/lazyeval FALSE FALSE 2017-10-29 CRAN (R 3.4.2)
lme4 1.1.15 1.1-15 C:/Users/ngreen1/Documents/R/win-library/3.4/lme4 FALSE FALSE 2017-12-21 CRAN (R 3.4.3)
logging 0.7.103 0.7-103 C:/Users/ngreen1/Documents/R/win-library/3.4/logging FALSE FALSE 2013-04-12 CRAN (R 3.4.1)
LTBIscreeningproject 0.1.0 0.1.0 C:\\Users\\ngreen1\\Dropbox\\TB\\LTBI\\R\\LTBIscreeningproject TRUE FALSE <NA> local
magrittr 1.5 1.5 C:/Users/ngreen1/Documents/R/win-library/3.4/magrittr TRUE FALSE 2014-11-22 CRAN (R 3.4.1)
MASS 7.3.49 7.3-49 C:/Program Files/R/R-3.4.4/library/MASS FALSE FALSE 2018-02-23 CRAN (R 3.4.4)
Matrix 1.2.12 1.2-12 C:/Program Files/R/R-3.4.4/library/Matrix FALSE FALSE 2017-11-30 CRAN (R 3.4.4)
memoise 1.1.0 1.1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/memoise TRUE FALSE 2018-04-10 Github (r-lib/memoise@06d16ec)
minqa 1.2.4 1.2.4 C:/Users/ngreen1/Documents/R/win-library/3.4/minqa FALSE FALSE 2014-10-09 CRAN (R 3.4.1)
miscUtilities 0.1.0 0.1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/miscUtilities TRUE FALSE 2018-04-18 local
mstate 0.2.10 0.2.10 C:/Users/ngreen1/Documents/R/win-library/3.4/mstate TRUE FALSE 2016-12-04 CRAN (R 3.4.1)
muhaz 1.2.6 1.2.6 C:/Users/ngreen1/Documents/R/win-library/3.4/muhaz FALSE FALSE 2014-08-09 CRAN (R 3.4.1)
munsell 0.4.3 0.4.3 C:/Users/ngreen1/Documents/R/win-library/3.4/munsell FALSE FALSE 2016-02-13 CRAN (R 3.4.1)
mvtnorm 1.0.7 1.0-7 C:/Users/ngreen1/Documents/R/win-library/3.4/mvtnorm FALSE FALSE 2018-01-26 CRAN (R 3.4.3)
nlme 3.1.131.1 3.1-131.1 C:/Program Files/R/R-3.4.4/library/nlme FALSE FALSE 2018-02-16 CRAN (R 3.4.4)
nloptr 1.0.4 1.0.4 C:/Users/ngreen1/Documents/R/win-library/3.4/nloptr FALSE FALSE 2014-08-04 CRAN (R 3.4.1)
pillar 1.2.1 1.2.1 C:/Users/ngreen1/Documents/R/win-library/3.4/pillar FALSE FALSE 2018-02-27 CRAN (R 3.4.3)
pkgconfig 2.0.1 2.0.1 C:/Users/ngreen1/Documents/R/win-library/3.4/pkgconfig FALSE FALSE 2017-03-21 CRAN (R 3.4.1)
plotCostEffectiveness 0.1.0 0.1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/plotCostEffectiveness TRUE FALSE 2018-03-15 local
plyr 1.8.4 1.8.4 C:/Users/ngreen1/Documents/R/win-library/3.4/plyr FALSE FALSE 2016-06-08 CRAN (R 3.4.1)
proto 1.0.0 1.0.0 C:/Users/ngreen1/Documents/R/win-library/3.4/proto FALSE FALSE 2016-10-29 CRAN (R 3.4.3)
purrr 0.2.4 0.2.4 C:/Users/ngreen1/Documents/R/win-library/3.4/purrr TRUE FALSE 2017-10-18 CRAN (R 3.4.2)
QALY 0.1.0 0.1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/QALY TRUE FALSE 2018-07-16 local
quadprog 1.5.5 1.5-5 C:/Users/ngreen1/Documents/R/win-library/3.4/quadprog FALSE FALSE 2013-04-17 CRAN (R 3.4.1)
R6 2.2.2 2.2.2 C:/Users/ngreen1/Documents/R/win-library/3.4/R6 FALSE FALSE 2017-06-17 CRAN (R 3.4.1)
RColorBrewer 1.1.2 1.1-2 C:/Users/ngreen1/Documents/R/win-library/3.4/RColorBrewer FALSE FALSE 2014-12-07 CRAN (R 3.4.1)
Rcpp 0.12.16 0.12.16 C:/Users/ngreen1/Documents/R/win-library/3.4/Rcpp FALSE FALSE 2018-03-13 CRAN (R 3.4.4)
readr 1.1.1 1.1.1 C:/Users/ngreen1/Documents/R/win-library/3.4/readr FALSE FALSE 2017-05-16 CRAN (R 3.4.1)
readxl 1.0.0 1.0.0 C:/Users/ngreen1/Documents/R/win-library/3.4/readxl TRUE FALSE 2017-04-18 CRAN (R 3.4.1)
reshape 0.8.7 0.8.7 C:/Users/ngreen1/Documents/R/win-library/3.4/reshape TRUE FALSE 2017-08-06 CRAN (R 3.4.1)
reshape2 1.4.3 1.4.3 C:/Users/ngreen1/Documents/R/win-library/3.4/reshape2 FALSE FALSE 2017-12-11 CRAN (R 3.4.3)
rgexf 0.15.3 0.15.3 C:/Users/ngreen1/Documents/R/win-library/3.4/rgexf FALSE FALSE 2015-03-24 CRAN (R 3.4.1)
rlang 0.2.0 0.2.0 C:/Users/ngreen1/Documents/R/win-library/3.4/rlang FALSE FALSE 2018-02-20 CRAN (R 3.4.3)
robustbase 0.92.8 0.92-8 C:/Users/ngreen1/Documents/R/win-library/3.4/robustbase FALSE FALSE 2017-11-01 CRAN (R 3.4.3)
Rook 1.1.1 1.1-1 C:/Users/ngreen1/Documents/R/win-library/3.4/Rook FALSE FALSE 2014-10-20 CRAN (R 3.4.1)
roxygen2 6.0.1 6.0.1 C:/Users/ngreen1/Documents/R/win-library/3.4/roxygen2 FALSE FALSE 2017-02-06 CRAN (R 3.4.3)
rstudioapi 0.7 0.7 C:/Users/ngreen1/Documents/R/win-library/3.4/rstudioapi FALSE FALSE 2017-09-07 CRAN (R 3.4.1)
scales 0.5.0 0.5.0 C:/Users/ngreen1/Documents/R/win-library/3.4/scales FALSE FALSE 2017-08-24 CRAN (R 3.4.1)
sessioninfo 1.0.1.9000 1.0.1.9000 C:/Users/ngreen1/Documents/R/win-library/3.4/sessioninfo FALSE FALSE 2018-04-18 Github (r-lib/sessioninfo@c871d01)
stringi 1.1.7 1.1.7 C:/Users/ngreen1/Documents/R/win-library/3.4/stringi FALSE FALSE 2018-03-12 CRAN (R 3.4.1)
stringr 1.3.1 1.3.1 C:/Users/ngreen1/Documents/R/win-library/3.4/stringr FALSE FALSE 2018-05-10 CRAN (R 3.4.4)
survival 2.41.3 2.41-3 C:/Program Files/R/R-3.4.4/library/survival TRUE FALSE 2017-04-04 CRAN (R 3.4.4)
tensorA 0.36 0.36 C:/Users/ngreen1/Documents/R/win-library/3.4/tensorA FALSE FALSE 2010-12-01 CRAN (R 3.4.1)
testthat 2.0.0 2.0.0 C:/Users/ngreen1/Documents/R/win-library/3.4/testthat FALSE FALSE 2017-12-13 CRAN (R 3.4.3)
tibble 1.4.2 1.4.2 C:/Users/ngreen1/Documents/R/win-library/3.4/tibble TRUE FALSE 2018-01-22 CRAN (R 3.4.3)
tidyr 0.8.0 0.8.0 C:/Users/ngreen1/Documents/R/win-library/3.4/tidyr TRUE FALSE 2018-01-29 CRAN (R 3.4.3)
treeSimR 0.1.0 0.1.0 C:/Users/ngreen1/Documents/R/win-library/3.4/treeSimR TRUE FALSE 2018-06-21 local
viridis 0.5.0 0.5.0 C:/Users/ngreen1/Documents/R/win-library/3.4/viridis FALSE FALSE 2018-02-02 CRAN (R 3.4.3)
viridisLite 0.3.0 0.3.0 C:/Users/ngreen1/Documents/R/win-library/3.4/viridisLite FALSE FALSE 2018-02-01 CRAN (R 3.4.3)
visNetwork 2.0.3 2.0.3 C:/Users/ngreen1/Documents/R/win-library/3.4/visNetwork FALSE FALSE 2018-01-09 CRAN (R 3.4.3)
withr 2.1.2 2.1.2 C:/Users/ngreen1/Documents/R/win-library/3.4/withr FALSE FALSE 2018-03-15 CRAN (R 3.4.1)
XML 3.98.1.10 3.98-1.10 C:/Users/ngreen1/Documents/R/win-library/3.4/XML FALSE FALSE 2018-02-19 CRAN (R 3.4.3)
xml2 1.2.0 1.2.0 C:/Users/ngreen1/Documents/R/win-library/3.4/xml2 FALSE FALSE 2018-01-24 CRAN (R 3.4.3)
yaml 2.1.18 2.1.18 C:/Users/ngreen1/Documents/R/win-library/3.4/yaml FALSE FALSE 2018-03-08 CRAN (R 3.4.3)
Local: master C:/Users/ngreen1/Dropbox/TB/LTBI/R/LTBIscreeningproject/
Remote: master @ origin (https://github.com/n8thangreen/LTBIscreeningproject.git)
Head: [818fb86] 2018-07-13: updating calc_QALY_tb to use intervals with tests and debugging