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pyproject.toml
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[tool.black]
target-version = ["py312"]
[tool.poetry]
name = "edd"
version = "3.0.0.dev0"
description = "Online repository of standardized biological experimental data and metadata."
license = "BSD-3-Clause"
authors = [
"William Morrell <WCMorrell@lbl.gov>",
]
maintainers = [
"William Morrell <WCMorrell@lbl.gov>",
"Steve Lane <SDLane@lbl.gov>",
]
readme = "README.md"
homepage = "https://public-edd.jbei.org/"
repository = "https://github.com/JBEI/EDD"
documentation = "https://edd-docs.jbei.org/"
packages = [
{ from = "server", include = "edd" },
{ from = "server", include = "main" },
{ from = "server", include = "jbei" },
]
[tool.poetry.build]
generate-setup-file = true
[tool.poetry.dependencies]
python = "^3.12"
arrow = "^1.2.3"
boto3 = "^1.26.148"
celery = "^5.3.0"
channels = "^4.0.0"
channels-redis = "^4.0.0"
daphne = "^4.0.0"
django = "~5.0.6"
django-allauth = "*" # jumped from 0.63 to 64.0, keep unpinned
django-auth-ldap = "^4.3.0"
django-environ = "^0.11.2"
django-filter = "*" # uses CalVer, keep unpinned
django-redis = "^5.2.0"
django-storages = "^1.13.2"
django-threadlocals = "^0.10"
djangorestframework = "^3.14.0"
djangorestframework-csv = "^3.0.2"
djangorestframework-simplejwt = "^5.2.2"
drf-spectacular = {extras = ["sidecar"], version = "0.27.2"}
gevent = "^23.9.1"
gunicorn = ">=21.2.0"
invoke = "^2.1.2"
openpyxl = "^3.1.2"
pillow = "^10.0.1"
psycopg = {extras = ["binary"], version = "^3.1.9"}
python-libsbml = "^5.20.1"
rdflib = "^7.0.0"
requests = "^2.31.0"
sqlalchemy = "^2.0.15"
uvicorn = {extras = ["standard"], version = "^0.31.0"}
uvicorn-worker = "^0.2.0"
watchdog = "^3.0.0"
[tool.poetry.group.dev.dependencies]
coverage = "^7.2.7"
django-debug-toolbar = ">=4.4.6"
factory-boy = "^3.2.1"
faker = ">=19.6.2"
pytest = ">=7.3.1"
pytest-asyncio = "0.*"
pytest-django = "^4.5.2"
time-machine = "^2.12.0"
[tool.poetry.group.docs.dependencies]
mkdocs = "^1.4.3"
mkdocs-bootswatch = "^1.1"
pygments = "^2.15.1"
pymdown-extensions = "^10.0.1"
[tool.ruff]
fix = true
line-length = 99
src = ["server", "setup", "startup-tasks"]
target-version = "py311"
[tool.ruff.lint]
select = ["E", "F", "W", "C90", "I"]