environment.yml

name: simulator
channels:
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - asn1crypto=1.3.0=py36_0
  - biopython=1.76=py36h7b6447c_0
  - blas=1.0=mkl
  - bzip2=1.0.8=h7b6447c_0
  - ca-certificates=2020.1.1=0
  - certifi=2019.11.28=py36_0
  - cffi=1.14.0=py36h2e261b9_0
  - chardet=3.0.4=py36_1003
  - cryptography=2.8=py36h1ba5d50_0
  - curl=7.68.0=hbc83047_0
  - future=0.18.2=py36_0
  - idna=2.8=py36_0
  - insilicoseq=1.4.5=py_0
  - intel-openmp=2020.0=166
  - joblib=0.14.1=py_0
  - krb5=1.17.1=h173b8e3_0
  - ld_impl_linux-64=2.33.1=h53a641e_7
  - libcurl=7.68.0=h20c2e04_0
  - libdeflate=1.0=h14c3975_1
  - libedit=3.1.20181209=hc058e9b_0
  - libffi=3.2.1=hd88cf55_4
  - libgcc-ng=9.1.0=hdf63c60_0
  - libgfortran-ng=7.3.0=hdf63c60_0
  - libssh2=1.8.2=h1ba5d50_0
  - libstdcxx-ng=9.1.0=hdf63c60_0
  - mkl=2020.0=166
  - mkl-service=2.3.0=py36he904b0f_0
  - mkl_fft=1.0.15=py36ha843d7b_0
  - mkl_random=1.1.0=py36hd6b4f25_0
  - ncurses=6.1=he6710b0_1
  - numpy=1.18.1=py36h4f9e942_0
  - numpy-base=1.18.1=py36hde5b4d6_1
  - openssl=1.1.1d=h7b6447c_4
  - pandas=1.0.1=py36h0573a6f_0
  - pip=20.0.2=py36_1
  - pycparser=2.19=py36_0
  - pyopenssl=19.1.0=py36_0
  - pysam=0.15.3=py36hda2845c_1
  - pysocks=1.7.1=py36_0
  - python=3.6.10=h0371630_0
  - python-dateutil=2.8.1=py_0
  - pytz=2019.3=py_0
  - readline=7.0=h7b6447c_5
  - requests=2.22.0=py36_1
  - scipy=1.4.1=py36h0b6359f_0
  - setuptools=45.2.0=py36_0
  - six=1.14.0=py36_0
  - sqlite=3.31.1=h7b6447c_0
  - tk=8.6.8=hbc83047_0
  - urllib3=1.25.8=py36_0
  - wheel=0.34.2=py36_0
  - xz=5.2.4=h14c3975_4
  - zlib=1.2.11=h7b6447c_3
  - pip:
    - bioseq==0.2.3
    - h5py==2.10.0
    - ont-fast5-api==3.0.1
    - progressbar33==2.4