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HumanGenome

Here is the repo for the human genome reference files and other related files More information can be found Reference genomes and Gene models impact on variant interpretation

Brief introduction

There are SO MANY different versions of human genome reference files for different research purposes. In general, there are several factors contributed to the version of reference genome including official release versions, alternative contigs, decoy sequence.

Release Version

Human genome reference is maintained by [Genome Reference Consortium] (https://www.ncbi.nlm.nih.gov/grc) Currently, two major releases GRCh37 and GRCh38 are widely adopted by many international genome projects.
Some regional fixes known as patches are also avalaible after each major assembly has been released.

Alternative contigs

Here, I collected different versions of human genome

Decoy

Colons can be used to align columns.

Tables Source Name
col 3 is right-aligned $1600
col 2 is centered $12
zebra stripes are neat $1

###Broad Institute Reference on [GCP] (https://console.cloud.google.com/storage/browser/gcp-public-data--broad-references;tab=objects?prefix=)