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Description
Provide the solver name
Laplace Gillespie Solver
Link a paper or provide a reference for the described solver
https://arxiv.org/abs/1601.01490
Describe a usecase of the solver
The Laplace Gillespie solver permits the simulation of events with non-Poisson distributed wait times by generalising the Gillespie algorithm to simulate events with event-modulated Poisson* wait times. Using specific distributions that Poisson rates are drawn from, p(
(Description is a draft)
Describe alternatives you've considered (optional)
The Non-Markovian Gillespie algorithm (nMGA) similarly permits such wait times but is more computationally expensive, provides an approximate trajectory and would require more time to implement.
Describe changes to pyRBM core code that might be required to implement (optional)
Each rule will require an optional wait time distribution to be associated with it. Checks are required that the Laplace Gillespie solver is used for such model utilising this optional feature.
Additional context (optional)
Event-modulated Poisson processes are Poisson processes with rates drawn from a probability distribution p(