DESCRIPTION

Package: Rphenograph
Type: Package
Title: R implementation of the phenograph algorithm
Version: 0.99.1
Date: 2015-09-07
Author: Hao Chen
Maintainer: Hao Chen <chen_hao@immunol.a-star.edu.sg>
Description: A simple R implementation of the phenograph [PhenoGraph](http://
    www.cell.com/cell/abstract/S0092-8674(15)00637-6) algorithm, which is a
    clustering method designed for high-dimensional single-cell data analysis.
    It works by creating a graph ("network") representing phenotypic similarities
    between cells by calclating the Jaccard coefficient between nearest-neighbor
    sets, and then identifying communities using the well known ["Louvain method"]
    (https://sites.google.com/site/findcommunities/) in this graph.
Depends:
    R (>= 2.10.0), ggplot2, igraph
Imports:
    igraph(>= 1.0.1),
    RANN(>= 2.5),
    Rcpp (>= 0.12.0),
    ggplot2
LinkingTo: Rcpp
Suggests:
    testthat
License: Artistic-2.0
RoxygenNote: 5.0.1