Context & citation:
This repository contains scripts for the analysis of infected Bombus terrestris queens.
These scripts are modifications of scripts used by Colgan et el. (2019, Molecular Ecology).
If reusing scripts within the present repository, please cite the original source as well and follow instructions on reuse.
Scripts available at: https://github.com/wurmlab/Bter_neonicotinoid_exposure_experiment
The results of this analysis are described in:
Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens Colgan, T.J., Carolan,J.C., Sumner, S., Blaxter, M.L., Brown, M.J.F. Insect Molecular Biology
This work is distributed under the GPLv3 license. Reuse of code derived from this repository is permitted under two conditions:
- Proper attribution (i.e., citation of the associated publication; see CITATION.cff and above).
- Publication of reused scripts on an open-access platform, such as Github.
This repository contains the following subdirectories:
|-01_quality_assessment
|-02_transcript_quantification
|-03_differential_expression_analysis
|-04_gene_ontology_enrichment_analysis
|-05_visualisation_scripts
|-06_deg_assessment_analysis
|-07_graphics