NAMESPACE

exportClasses(DLData,Alphabet);
export(DLData,getDeps,getPWM,plotDeplogo,plotDepmatrix,plotDeparcs,colorchart,deprects,logo,subLines,subBoxes,Alphabet,plotBlocks,partition,filterColumns,suggestColors,replaceColors,revcom,filter.by.gaps,filter.by.conservation,filter.by.dependencies,alphabet.dna,alphabet.dna.gap,alphabet.rna,alphabet.rna.gap,alphabet.protein,alphabet.protein.gap,summary.DLData);
S3method(getDeps,DLData);
S3method(getDeps,data.frame);
S3method(getPWM,DLData);
S3method(plotDeplogo,DLData);
S3method(partition,DLData);
S3method(plotBlocks,DLData);
S3method(plotBlocks,list);
S3method(dim,DLData);
S3method(length,DLData);
S3method(filterColumns,DLData);
S3method(suggestColors,DLData);
S3method(replaceColors,DLData);
S3method(revcom,DLData);
S3method(summary,DLData);
S3method(summary,list);
importFrom("grDevices", "boxplot.stats", "col2rgb", "gray", "rgb", "rainbow")
importFrom("graphics", "abline", "axTicks", "axis", "image", "layout",
             "lines", "mtext", "par", "plot", "plot.new", "points",
             "polygon", "rect")
importFrom("stats", "median", "pchisq","cmdscale")