pyproject.toml

[tool.poetry]
name = "broadside-cycif-annotate-unmix"
version = "0.1.0"
description = "Annotation and unmixing for the Laboratory for Bio-Micro Devices @ BWH"
readme = "README.md"
license = "LICENSE"
authors = ["Sebastian Ahn <wahn1@bwh.harvard.edu>"]
keywords = [
    "microscopy",
    "imaging",
    "bio-imaging"
]
classifiers = [
    "Development Status :: 1 - Planning",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Image Processing"
]
repository = "https://github.com/biomicrodev/broadside-cycif-annotate-unmix"
homepage = "https://jonaslab.bwh.harvard.edu"
packages = [{ include = "broadside", from = "src" }]

[tool.poetry.dependencies]
python = ">=3.8,<3.12"
bokeh = ">=2.4.2,<3"
bmd-perf = { git = "https://github.com/biomicrodev/bmd-perf.git", branch = "master" }
dask = "^2023.3.1"
distributed = "^2023.3.2.1"
matplotlib = "^3.7.1"
napari = { version = "^0.4", extras = ["pyside2"] }
natsort = "^8.3.1"
numpy = "^1.24.2"
ome-types = "^0.3.3"
ome-zarr = "^0.6.1"
picasso = { git = "https://github.com/biomicrodev/picasso.git", branch = "master" }
pillow = "^9.4.0"
pint = "^0.20.1"
pooch = "^1.7.0"
scikit-image = "^0.20.0"
tifffile = "^2023.2.28"
zarr = "^2.14.2"
structlog = "^23.1.0"

[tool.poetry.group.dev.dependencies]
black = { version = "^23.1", extras = ["d"] }

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"