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divide protein blast databases #3

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jvollme opened this issue Nov 30, 2021 · 0 comments

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jvollme commented Nov 30, 2021

Divide protein blast databases into smaller subsets (similar to nucleotide dbs).
possibilities:

seperate by component sub-db (gtdb or refseq_eukaryote/virus)
seperate into roughly equal numbers of proteins

Test if this speeds up blasts when blasting one-by-one, always devoting all threads to each single db
Test if this speeds up blasts when blasting all simultaneously, dividing threads over all dbs (when using option 1: prioitize larer sub-DBs)
select and permanentlyy implement the faster option

jvollme added the enhancement label

jvollme added this to the Improvements A milestone

jvollme self-assigned this

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