example_geo1.m

addpath('..');

%% Create cobiveco object providing all parameters

% config.inPrefix = 'geo1/heart';
% config.outPrefix = 'result_geo1/';
% config.exportLevel = 3;
% config.verbose = true;
% config.mappingTol = 0.5;
% config.tol = 1e-8;
% config.maxit = 3000;
% config.truncSeptSur = [20 10];
% config.abExtrapSmooth = 0.25;
% config.mmgSizingParam = [0.1 0.9 1.1];
% c = cobiveco(config);

%% Create cobiveco object providing only subset of parameters

c = cobiveco(struct('inPrefix','geo1/heart', 'outPrefix','result_geo1/', 'exportLevel',3,'CobivecoX',0));

%% Compute coordinates and retrieve config and results

% prepareMesh0 decides on which Cobiveco version to be used
c.prepareMesh0;
if c.cfg.CobivecoX == true
    c.computeAllCobivecoX;
else 
    c.computeAllCobiveco;
end
config = c.cfg;
result = c.result;
R = c.R;

%% Export config as JSON

fid = fopen(sprintf('%sconfig.json', config.outPrefix), 'w');
fwrite(fid, jsonencode(config));
fclose(fid);