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Modelling Pathogen Response of the Human Immune System in a Reduced State Space

This repository contains the Python libraries dataset_lib.py and classification_lib.py that include the main functionalities introduced in the paper. The example_usage.ipynb notebook provides usage examples of differential expression computation and the Naive Bayes classifier.

Dependencies

Make sure you have the following Python libraries installed:

  • NumPy
  • Pandas
  • Scikit-learn
  • Anndata