pyproject.toml

[project]
name = "zol"
authors = [{name="Rauf Salamzade", email="salamzader@gmail.com"}]
version = "1.5.8"
readme = "README.md"
description = "zol suite for detection and evolutionary analysis of gene clusters."

[build-system]
requires = ['setuptools']
build-backend = "setuptools.build_meta"

[tool.setuptools]
script-files=['docker/ZOL',
               'bin/zol',
               'bin/fai',
               'bin/prepTG',
               'bin/abon',
               'bin/apos',
               'bin/atpoc',
               'bin/cgc',
               'bin/cgcg', 
               'bin/salt',
               'bin/zol-scape',
               'scripts/genbankToFasta.py',
               'scripts/generateSyntenicVisual.py',
               'scripts/annotateProtSeqs.py',
               'scripts/selectSpecificGeneClusters.py',
               'scripts/runProdigalAndMakeProperGenbank.py',
               'scripts/listAllGenomesInDirectory.py',
               'scripts/setup_annotation_dbs.py',
               'scripts/processNCBIGenBank.py',
               'scripts/extractBiG-SCAPEclusters.py',
               'src/zol/orthologs/findOrthologs.py',
               'scripts/convertMiniprotGffToGbkAndProt.py',
               'scripts/cagecatProcess.py',
               'scripts/fastgenomicsNeighborhoodToGenBanks.py']

[tool.setuptools.packages.find]
where = ["src"]