NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(print,ampvis2)
S3method(print,coreplot)
S3method(print,figcaption)
S3method(print,hmfunplot)
export("%>%")
export(aggregate_abund)
export(amp_alpha_diversity)
export(amp_alphadiv)
export(amp_boxplot)
export(amp_core)
export(amp_export_fasta)
export(amp_export_long)
export(amp_export_otutable)
export(amp_filter_samples)
export(amp_filter_taxa)
export(amp_frequency)
export(amp_heatmap)
export(amp_import_biom)
export(amp_import_usearch)
export(amp_load)
export(amp_merge_ampvis2)
export(amp_merge_replicates)
export(amp_mergereplicates)
export(amp_octave)
export(amp_ordinate)
export(amp_otu_network)
export(amp_rank_abundance)
export(amp_rankabundance)
export(amp_rarecurve)
export(amp_rarefaction_curve)
export(amp_rarefy)
export(amp_subset_samples)
export(amp_subset_taxa)
export(amp_time_series)
export(amp_timeseries)
export(amp_venn)
export(filter_otus)
export(filter_species)
export(matchOTUs)
export(normaliseTo100)
import(ggplot2)
importFrom(RColorBrewer,brewer.pal)
importFrom(ape,drop.tip)
importFrom(ape,is.rooted)
importFrom(ape,node.depth)
importFrom(ape,node.depth.edgelength)
importFrom(ape,pcoa)
importFrom(ape,read.FASTA)
importFrom(ape,reorder.phylo)
importFrom(ape,write.dna)
importFrom(cli,cat_line)
importFrom(cli,rule)
importFrom(crayon,italic)
importFrom(crayon,underline)
importFrom(data.table,"%chin%")
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fifelse)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,getDTthreads)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(data.table,setDF)
importFrom(data.table,setDT)
importFrom(data.table,setDTthreads)
importFrom(data.table,setcolorder)
importFrom(data.table,setkey)
importFrom(data.table,setorderv)
importFrom(data.table,uniqueN)
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,intersect)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_at)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,chull)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(parallel,detectCores)
importFrom(plotly,ggplotly)
importFrom(plyr,ldply)
importFrom(purrr,imap)
importFrom(purrr,reduce)
importFrom(scales,squish)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,reformulate)
importFrom(stats,sd)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_to_title)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(tidyr,unite)
importFrom(tools,file_ext)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,unzip)
importFrom(vegan,cca)
importFrom(vegan,decorana)
importFrom(vegan,decostand)
importFrom(vegan,diversity)
importFrom(vegan,envfit)
importFrom(vegan,estimateR)
importFrom(vegan,metaMDS)
importFrom(vegan,rarefy)
importFrom(vegan,rda)
importFrom(vegan,rrarefy)
importFrom(vegan,scores)
importFrom(vegan,vegdist)