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Subworkflow to perform read alignments and coverage calculations.
multiple channels emitting file formats to be used by their respective tool.
For reference, coverage file formats are being discussed here: (issue-#5)
alignments.sam
alignments.bam
coverage.tsv
contig
coverage
The text was updated successfully, but these errors were encountered:
nf-core has bowtie module, but they changed their format.
Old format still here: https://github.com/KwanLab/Autometa/tree/dev/modules/nf-core/modules/bowtie2/align
Sorry, something went wrong.
🎨🍏 WIP for issue-#5 and issue-#7
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Subworkflow to perform read alignments and coverage calculations.
Required
multiple channels emitting file formats to be used by their respective tool.
For reference, coverage file formats are being discussed here: (issue-#5)
File formats to emit
alignments.sam
alignments.bam
coverage.tsv
(header with at leastcontig
andcoverage
columns)coverage.tsv
(no header)The text was updated successfully, but these errors were encountered: