_pkgdown.yml

url: https://lapkb.github.io/Pmetrics/
template:
  bootstrap: 5
  bootswatch: flatly
navbar:
  structure:
      left:  [intro, reference, articles, tutorials, news]
      right: [search, github]
  components:
    intro:
      text: Start Here
      href: articles/pmetrics.html
    articles:
      text: Articles
      menu:
        - text: Introduction
          href: articles/intro.html
        - text: Overview
          href: articles/overview.html
        - text: Workflow
          href: articles/workflow.html
        - text: Data Objects
          href: articles/data.html
        - text: Model Objects
          href: articles/models.html
        - text: Running the fit
          href: articles/running.html
        - text: Created Objects
          href: articles/objects.html
        - text: Simulation
          href: articles/simulation.html
        - text: Plotly plots
          href: articles/plotly.html
home:
  sidebar:
    structure: [links, license, community, citation, authors, dev]
    components:
      custom:
        title: Discussion
        text: Discussion board
        href: https://github.com/LAPKB/Pmetrics/discussions
reference:
- title: R6 objects
  desc: Create Pmetrics R6 objects
- contents: 
  - starts_with("PM_")
  - ab
  - additive
  - combination
  - covariate
  - errorPoly
  - fixed
  - msd
  - proportional
  - build_model
- title: Make functions
  desc: Functions for making Pmetrics objects
- contents:
  - PMtree
  - starts_with("make")
- title: Optimal sampling
  desc: Functions to calculate optimal sample times
- contents:
  - Dopt
  - MM_opt
- title: Plot
  desc: Functions for plotting Pmetrics output
- contents: 
  - starts_with("plot")
  - ab_line
  - add_shapes
  - add_smooth
  - export_plotly
  - sub_plot
- title: Summary
  desc: Functions for summarizing Pmetrics output
- contents: starts_with("summary")
- title: Print
  desc: Functions for printing Pmetrics output
- contents: starts_with("print")
- title: Run
  desc: Run functions for modeling or simulating data
- contents: ends_with("run")
- title: Parse/load
  desc: Parse functions for loading modeled or simulated data
- contents:
  - ends_with("parse")
  - PMload
- title: Auxilliary
  desc: Auxilliary functions
- contents:
  - qgrowth
  - zBMI
  - ss.PK
  - mtsknn.eq
  - PMcompare
  - PMgetCRCL
  - PMstep
- title: Datasets
  desc: Pmetrics datasets
- contents: has_keyword("datasets")
- title: Data processing
  desc: Data processing and interconversion
- contents:
  - NM2PM
  - PMwrk2csv
  - PMmb2csv
  - PMmatrixRelTime
  - PMreadMatrix
  - PMwriteMatrix
- title: Utility
  desc: Utility functions
- contents:
  - PMFortranConfig
  - PMbuild
  - PMcheck
  - PMcode
  - PMlogin
  - PMlogout
  - PMpatch
  - PMregister
  - PMreport
  - ERRreport
  - PMsave
  - PMtest
  - PMupdate
  - getPMoptions
  - setPMoptions
  - editPMoptions
  - movePMoptions
  - update_gfortran
- title: Reference
  desc: Reference functions
- contents:
  - PMFortranConfig
  - PMmanual
  - PMnews
  - Pmetrics-package