R-package-windows.yml

name: Install package

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

permissions:
  contents: read

jobs:
  build:
    runs-on: windows-latest
    strategy:
      matrix:
        r-version: ['4.3.3', '4.4.0']

    steps:
      - uses: actions/checkout@v3
      
      - name: Set up R ${{ matrix.r-version }}
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.r-version }}

      - name: Install Bioconductor and biomaRt
        run: |
          if (!requireNamespace("BiocManager", quietly = TRUE))
            install.packages("BiocManager")
          BiocManager::install("biomaRt")
        shell: Rscript {0}
          
      - name: Install dependencies
        run: |
          install.packages(c("remotes", "rcmdcheck"))
          remotes::install_deps(dependencies = TRUE)
        shell: Rscript {0}
      
      - name: Check
        run: |
          rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error", build_args = "--no-build-vignettes", check_dir = "check_dir")
        shell: Rscript {0}
        timeout-minutes: 10