From 5a12948338bd1a3ca2de0220353596aaf1c922a6 Mon Sep 17 00:00:00 2001 From: praitayini Date: Wed, 19 Apr 2023 20:10:33 -0500 Subject: [PATCH 1/4] testing grad requirements --- venv/pip_install_gradtensor.txt | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/venv/pip_install_gradtensor.txt b/venv/pip_install_gradtensor.txt index 4c48915..d603996 100644 --- a/venv/pip_install_gradtensor.txt +++ b/venv/pip_install_gradtensor.txt @@ -1,2 +1,8 @@ -nibabel==2.5.2 +nibabel==3.0.0 dipy==1.5.0 +fpdf +imageio +pypng +freetype-py +numpy==1.21.* +-e git+ssh://git@github.com/scilus/scilpy.git@1195f002edc35220ea95383b1234aa73138cb623#egg=scilpy From 5f5c8400a07e545917eb5ca0cefc186c16df42ac Mon Sep 17 00:00:00 2001 From: praitayini Date: Wed, 19 Apr 2023 20:37:41 -0500 Subject: [PATCH 2/4] fix scilpy version install --- venv/pip_install_gradtensor.txt | 1 - 1 file changed, 1 deletion(-) diff --git a/venv/pip_install_gradtensor.txt b/venv/pip_install_gradtensor.txt index d603996..2d5bc7d 100644 --- a/venv/pip_install_gradtensor.txt +++ b/venv/pip_install_gradtensor.txt @@ -5,4 +5,3 @@ imageio pypng freetype-py numpy==1.21.* --e git+ssh://git@github.com/scilus/scilpy.git@1195f002edc35220ea95383b1234aa73138cb623#egg=scilpy From 6f76ab4ce6ba1077f209720c4b015bdb4d2e7606 Mon Sep 17 00:00:00 2001 From: praitayini Date: Wed, 19 Apr 2023 20:53:45 -0500 Subject: [PATCH 3/4] back to the old file --- venv/pip_install_gradtensor.txt | 5 ----- 1 file changed, 5 deletions(-) diff --git a/venv/pip_install_gradtensor.txt b/venv/pip_install_gradtensor.txt index 2d5bc7d..ae1a973 100644 --- a/venv/pip_install_gradtensor.txt +++ b/venv/pip_install_gradtensor.txt @@ -1,7 +1,2 @@ nibabel==3.0.0 dipy==1.5.0 -fpdf -imageio -pypng -freetype-py -numpy==1.21.* From be616318068d903a3b4feba1f496484a4eeb7832 Mon Sep 17 00:00:00 2001 From: praitayini Date: Wed, 19 Apr 2023 22:14:55 -0500 Subject: [PATCH 4/4] update singularity to fix scilpy version --- Singularity | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/Singularity b/Singularity index bc5f704..9ac97fa 100644 --- a/Singularity +++ b/Singularity @@ -124,14 +124,13 @@ From: ubuntu:18.04 cd /APPS/gradtensor python3.8 -m venv gradvenv source gradvenv/bin/activate - pip3 install wheel - pip install -r /INSTALLERS/PreQual/venv/pip_install_gradtensor.txt wget https://bootstrap.pypa.io/get-pip.py python3.8 get-pip.py pip3 install --upgrade setuptools pip install fpdf imageio pypng freetype-py numpy==1.21.* git clone https://github.com/scilus/scilpy.git cd scilpy + git checkout 1.4.0 pip install -e . cd .. deactivate