From 60b4d41aa82216097844e3bda436af11991f261a Mon Sep 17 00:00:00 2001 From: praitayini Date: Mon, 17 Apr 2023 23:42:05 -0500 Subject: [PATCH 1/3] update version number and authors on pdf --- src/CODE/dtiQA_v7/vars.py | 4 ++-- src/CODE/dtiQA_v7/vis.py | 3 ++- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/src/CODE/dtiQA_v7/vars.py b/src/CODE/dtiQA_v7/vars.py index fc117be..25436c5 100755 --- a/src/CODE/dtiQA_v7/vars.py +++ b/src/CODE/dtiQA_v7/vars.py @@ -55,8 +55,8 @@ def __init__(self): # Define versioning and creation date - self.VERSION = '1.0.8' - self.CREATION_DATE = 'August 27, 2022' + self.VERSION = '1.1.0' + self.CREATION_DATE = 'April 18, 2023' # Define instance of SharedVars class that will be accessible to (and editable by) other modules diff --git a/src/CODE/dtiQA_v7/vis.py b/src/CODE/dtiQA_v7/vis.py index a64c351..5c7c58a 100755 --- a/src/CODE/dtiQA_v7/vis.py +++ b/src/CODE/dtiQA_v7/vis.py @@ -30,7 +30,8 @@ def vis_title(dwi_files, t1_file, pe_axis, pe_dirs, readout_times, use_topup, us 'Authors:\n' '- Leon Cai (leon.y.cai@vanderbilt.edu)\n' - '- Qi Yang (qi.yang@vanderbilt.edu)\n\n' + '- Qi Yang (qi.yang@vanderbilt.edu)\n' + '- Praitayini Kanakaraj (praitayini.kanakaraj@vanderbilt.edu)\n\n' 'Run Date: {}\n\n' From 996f2c5ab91f5898171ef33fe8c6de0979e6ff1c Mon Sep 17 00:00:00 2001 From: praitayini <31248960+praitayini@users.noreply.github.com> Date: Tue, 18 Apr 2023 00:05:32 -0500 Subject: [PATCH 2/3] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 56a5bd1..4730444 100644 --- a/README.md +++ b/README.md @@ -68,7 +68,7 @@ Note: The phase encoding axis, direction, and readout time must be known ahead o git clone https://github.com/MASILab/PreQual.git cd /path/to/repo/PreQual - git checkout v1.0.8 + git checkout v1.1.0 sudo singularity build /path/to/prequal.simg Singularity We use Singularity version 3.8 CE with root permissions. From 03b2b73b00cd51bdfadf4ca73d8d7cc698f29f6d Mon Sep 17 00:00:00 2001 From: praitayini Date: Tue, 18 Apr 2023 13:25:31 -0500 Subject: [PATCH 3/3] fix Singularity installer for gradtensorand clone main branch --- Singularity | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Singularity b/Singularity index 7459832..bc5f704 100644 --- a/Singularity +++ b/Singularity @@ -103,10 +103,9 @@ From: ubuntu:18.04 cd / apt-get -y install wget git gcc libpq-dev python-dev python-pip python3 python3.8 python3.8-venv python3.8-dev python3-dev python3-pip python3-venv python3-wheel libpng-dev libfreetype6-dev libblas3 liblapack3 libblas-dev liblapack-dev pkg-config cd /INSTALLERS - #git clone https://github.com/MASILab/PreQual.git - git clone -b pk https://github.com/praitayini/PreQual.git + git clone https://github.com/MASILab/PreQual.git cd PreQual - git checkout v1.0.8 + #git checkout v1.0.8 change to v1.1.0 after realease mv src/APPS/* /APPS mv src/CODE/* /CODE mv src/SUPPLEMENTAL/* /SUPPLEMENTAL @@ -126,6 +125,7 @@ From: ubuntu:18.04 python3.8 -m venv gradvenv source gradvenv/bin/activate pip3 install wheel + pip install -r /INSTALLERS/PreQual/venv/pip_install_gradtensor.txt wget https://bootstrap.pypa.io/get-pip.py python3.8 get-pip.py pip3 install --upgrade setuptools