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failure to run inccsight #1

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liliamqu opened this issue May 25, 2022 · 0 comments
Open

failure to run inccsight #1

liliamqu opened this issue May 25, 2022 · 0 comments

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@liliamqu
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Dear developers
I am trying to use inccsight in windows by docker. According to below docker information, it seems I install docker and inccsight image correctly

docker run thaiscaldeira/inccsight --helper
0.20.3

usage: app.py [-h] [-f [FOLDERS [FOLDERS ...]]] [-p [PARENTS [PARENTS ...]]]
              [-d [EXT_DATA]] [--port [PORT]] [-b [BASENAME]] [-m [MASKNAME]]
              [-s SEGM [SEGM ...]] [--staple] [-3d SEGM3D]
app.py: error: unrecognized arguments: --helper

but when I tried to run inccsight it did not work, could you help me to figure out what's the problem?
Here is the file structure of the data I use.
image
Here are some commands that I tried.

>docker run thaiscaldeira/inccsight -p .\Test2
0.20.3

Error: No subjects were imported
Terminating program.

> docker run thaiscaldeira/inccsight -f .\Test2\SUBJECT_001
0.20.3

Warning: Directory .\Test2\SUBJECT_001 did not contain all files required to perform the segmentation
Error: No subjects were imported
Terminating program.
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