pyproject.toml

[tool.poetry]
name = "novae_benchmark"
version = "0.0.1"
description = "Novae benchmark"
authors = ["Quentin Blampey <quentin.blampey@centralesupelec.fr>"]
packages = [{ include = "novae_benchmark" }]

[tool.poetry.dependencies]
python = ">=3.9,<3.13"
scanpy = ">=1.9.8"
lightning = ">=2.2.1"
torch = ">=2.2.1"
torch-geometric = ">=2.5.2"

[tool.poetry.group.dev.dependencies]
black = ">=22.8.0"
flake8 = ">=7.0.0"
isort = ">=5.10.1"
ipykernel = ">=6.22.0"
ipywidgets = ">=8.1.2"

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = "test_*.py"

[tool.black]
line-length = 120
include = '\.pyi?$'
exclude = '''
/(
      \.eggs         # exclude a few common directories in the
    | \.git          # root of the project
    | \.hg
    | \.mypy_cache
    | \.tox
    | \.venv
    | _build
    | buck-out
    | build
    | dist
  )/
'''

[tool.isort]
profile = "black"
skip_glob = ["*/__init__.py"]