From 9f66cc2e650aad63d45d8eef193c0e62eab5d2f8 Mon Sep 17 00:00:00 2001 From: Azure Pipelines Date: Thu, 30 May 2024 11:58:39 +0000 Subject: [PATCH] [skip ci] Update stable --- stable/_modules/mpas_tools/seaice/partition.html | 4 ++-- stable/generated/mpas_tools.io.write_netcdf.html | 4 ++-- .../generated/mpas_tools.mesh.conversion.convert.html | 2 +- stable/generated/mpas_tools.mesh.conversion.cull.html | 8 ++++---- stable/generated/mpas_tools.mesh.conversion.mask.html | 4 ++-- .../generated/mpas_tools.mesh.cull.cull_dataset.html | 8 ++++---- .../mpas_tools.mesh.cull.map_culled_to_base.html | 4 ++-- ...s_tools.mesh.mask.compute_lon_lat_region_masks.html | 2 +- ...s_tools.mesh.mask.compute_mpas_flood_fill_mask.html | 6 +++--- ...mpas_tools.mesh.mask.compute_mpas_region_masks.html | 4 ++-- ...as_tools.mesh.mask.compute_mpas_transect_masks.html | 4 ++-- ...astline_alteration.add_critical_land_blockages.html | 4 ++-- ...tline_alteration.add_land_locked_cells_to_mask.html | 4 ++-- ...coastline_alteration.widen_transect_edge_masks.html | 4 ++-- .../mpas_tools.ocean.depth.compute_depth.html | 2 +- .../generated/mpas_tools.ocean.depth.compute_zmid.html | 6 +++--- ..._tools.ocean.moc.make_moc_basins_and_transects.html | 2 +- ...ean.transects.find_transect_levels_and_weights.html | 10 +++++----- ...ansects.interp_mpas_to_transect_triangle_nodes.html | 4 ++-- ...an.transects.interp_mpas_to_transect_triangles.html | 4 ++-- ...nterp_transect_grid_to_transect_triangle_nodes.html | 4 ++-- .../mpas_tools.ocean.viz.plot_ocean_transects.html | 6 +++--- stable/generated/mpas_tools.translate.center.html | 2 +- .../generated/mpas_tools.translate.center_on_mesh.html | 4 ++-- stable/generated/mpas_tools.translate.translate.html | 2 +- ..._tools.viz.mesh_to_triangles.mesh_to_triangles.html | 2 +- .../mpas_tools.viz.paraview_extractor.extract_vtk.html | 2 +- ...ansects.find_planar_transect_cells_and_weights.html | 8 ++++---- ....viz.transects.find_transect_cells_and_weights.html | 8 ++++---- .../mpas_tools.viz.transects.make_triangle_tree.html | 2 +- stable/mesh_conversion.html | 8 ++++---- 31 files changed, 69 insertions(+), 69 deletions(-) diff --git a/stable/_modules/mpas_tools/seaice/partition.html b/stable/_modules/mpas_tools/seaice/partition.html index f06ebc74..9af0e266 100644 --- a/stable/_modules/mpas_tools/seaice/partition.html +++ b/stable/_modules/mpas_tools/seaice/partition.html @@ -502,8 +502,8 @@

Source code for mpas_tools.seaice.partition

     print("Regrid to desired mesh...")
     filenameOut = "icePresent_regrid.nc"
 
-    meshFilenameSrc = os.path.join(data_dir, 'seaice_QU60km_polar.nc')
-    filenameData = os.path.join(data_dir, 'icePresent_QU60km_polar.nc')
+    meshFilenameSrc = os.path.join(args.dataDir, 'seaice_QU60km_polar.nc')
+    filenameData = os.path.join(args.dataDir, 'icePresent_QU60km_polar.nc')
 
     regrid_to_other_mesh(
         meshFilenameSrc=meshFilenameSrc,
diff --git a/stable/generated/mpas_tools.io.write_netcdf.html b/stable/generated/mpas_tools.io.write_netcdf.html
index 5a331637..db4c60ae 100644
--- a/stable/generated/mpas_tools.io.write_netcdf.html
+++ b/stable/generated/mpas_tools.io.write_netcdf.html
@@ -149,7 +149,7 @@ 
mpas_tools.io.write_netcdf
 
Parameters:

 
    
-
  • ds (xarray.Dataset) – The dataset to save
    • 
+
  • ds (xarray.Dataset) – The dataset to save
    • 
 
  • fileName (str) – The path for the NetCDF file to write
    • 
 
  • fillValues (dict, optional) – A dictionary of fill values for different NetCDF types.  Default is
 mpas_tools.io.default_fills, which can be modified but which
@@ -158,7 +158,7 @@ 
    mpas_tools.io.write_netcdfmpas_tools.io.default_format, which can be modified but which
 defaults to 'NETCDF3_64BIT'
    • 
 
  • engine ({'netcdf4', 'scipy', 'h5netcdf'}, optional) – The library to use for NetCDF output.  The default is the same as
-in xarray.Dataset.to_netcdf() and depends on format.
+in xarray.Dataset.to_netcdf() and depends on format.
 You can override the default by setting
 mpas_tools.io.default_engine
    • 
 
  • char_dim_name (str, optional) – The name of the dimension used for character strings, or None to let
diff --git a/stable/generated/mpas_tools.mesh.conversion.convert.html b/stable/generated/mpas_tools.mesh.conversion.convert.html
index dc5be562..61290877 100644
--- a/stable/generated/mpas_tools.mesh.conversion.convert.html
+++ b/stable/generated/mpas_tools.mesh.conversion.convert.html
@@ -165,7 +165,7 @@ 
    mpas_tools.mesh.conversion.convert
 
    Parameters:
    
 
      
-
    • dsIn (xarray.Dataset) – A data set to convert
      • 
+
    • dsIn (xarray.Dataset) – A data set to convert
      • 
 
    • graphInfoFileName (str, optional) – A file path (relative or absolute) where the graph file (typically
 graph.info should be written out.  By default, graph.info is
 not saved.
      • 
diff --git a/stable/generated/mpas_tools.mesh.conversion.cull.html b/stable/generated/mpas_tools.mesh.conversion.cull.html
index b83c28eb..e898eafd 100644
--- a/stable/generated/mpas_tools.mesh.conversion.cull.html
+++ b/stable/generated/mpas_tools.mesh.conversion.cull.html
@@ -167,13 +167,13 @@ 
      mpas_tools.mesh.conversion.cull
 
      Parameters:
      
 
        
-
      • dsIn (xarray.Dataset) – A data set to cull, possibly with a cullCell field set to one where
+
      • dsIn (xarray.Dataset) – A data set to cull, possibly with a cullCell field set to one where
 cells should be removed
        • 
-
      • dsMask (xarray.Dataset or list, optional) – A data set (or data sets) with region masks that are 1 where cells
+
      • dsMask (xarray.Dataset or list, optional) – A data set (or data sets) with region masks that are 1 where cells
 should be culled
        • 
-
      • dsInverse (xarray.Dataset or list, optional) – A data set (or data sets) with region masks that are 0 where cells
+
      • dsInverse (xarray.Dataset or list, optional) – A data set (or data sets) with region masks that are 0 where cells
 should be culled
        • 
-
      • dsPreserve (xarray.Dataset or list, optional) – A data set (or data sets) with region masks that are 1 where cells
+
      • dsPreserve (xarray.Dataset or list, optional) – A data set (or data sets) with region masks that are 1 where cells
 should not be culled
        • 
 
      • graphInfoFileName (str, optional) – A file path (relative or absolute) where the graph file (typically
 culled_graph.info should be written out.  By default,
diff --git a/stable/generated/mpas_tools.mesh.conversion.mask.html b/stable/generated/mpas_tools.mesh.conversion.mask.html
index e9fbc13a..04c7b34c 100644
--- a/stable/generated/mpas_tools.mesh.conversion.mask.html
+++ b/stable/generated/mpas_tools.mesh.conversion.mask.html
@@ -164,8 +164,8 @@ 
        mpas_tools.mesh.conversion.mask
 
        Parameters:
        
 
          
-
        • dsMesh (xarray.Dataset, optional) – An MPAS mesh on which the masks should be created
          • 
-
        • fcMask (geometric_features.FeatureCollection, optional) – A feature collection containing features to use to create the mask
          • 
+
        • dsMesh (xarray.Dataset, optional) – An MPAS mesh on which the masks should be created
          • 
+
        • fcMask (geometric_features.FeatureCollection, optional) – A feature collection containing features to use to create the mask
          • 
 
        • logger (logging.Logger, optional) – A logger for the output if not stdout
          • 
 
        • dir (str, optional) – A directory in which a temporary directory will be added with files
 produced during mask creation and then deleted upon completion.
          • 
diff --git a/stable/generated/mpas_tools.mesh.cull.cull_dataset.html b/stable/generated/mpas_tools.mesh.cull.cull_dataset.html
index 147f10f8..c5547801 100644
--- a/stable/generated/mpas_tools.mesh.cull.cull_dataset.html
+++ b/stable/generated/mpas_tools.mesh.cull.cull_dataset.html
@@ -165,10 +165,10 @@ 
          mpas_tools.mesh.cull.cull_dataset
 
          Parameters:
          
 
            
-
          • ds (xarray.Dataset) – An MPAS dataset to cull
            • 
-
          • ds_base_mesh (xarray.Dataset) – The horizontal MPAS mesh before culling
            • 
-
          • ds_culled_mesh (xarray.Dataset) – The culled horizonal MPAS mesh
            • 
-
          • ds_map_culled_to_base (xarray.Dataset, optional) – An existing map from the base to the culled mesh created with
+
          • ds (xarray.Dataset) – An MPAS dataset to cull
            • 
+
          • ds_base_mesh (xarray.Dataset) – The horizontal MPAS mesh before culling
            • 
+
          • ds_culled_mesh (xarray.Dataset) – The culled horizonal MPAS mesh
            • 
+
          • ds_map_culled_to_base (xarray.Dataset, optional) – An existing map from the base to the culled mesh created with
 write_map_culled_to_base() or map_culled_to_base(). The dataset
 will be created (but not returned or saved to disk) if it is not passed
 as an argument.
            • 
diff --git a/stable/generated/mpas_tools.mesh.cull.map_culled_to_base.html b/stable/generated/mpas_tools.mesh.cull.map_culled_to_base.html
index 55496d61..86e6b409 100644
--- a/stable/generated/mpas_tools.mesh.cull.map_culled_to_base.html
+++ b/stable/generated/mpas_tools.mesh.cull.map_culled_to_base.html
@@ -165,8 +165,8 @@ 
            mpas_tools.mesh.cull.map_culled_to_base
 
            Parameters:
            
 
              
-
            • ds_base (xarray.Dataset) – The horizontal MPAS mesh before culling
              • 
-
            • ds_culled (xarray.Dataset) – The culled horizonal MPAS mesh
              • 
+
            • ds_base (xarray.Dataset) – The horizontal MPAS mesh before culling
              • 
+
            • ds_culled (xarray.Dataset) – The culled horizonal MPAS mesh
              • 
 
            • workers (int, optional) – The number of threads to use to query base mesh elements. The default
 is all available threads (workers=-1)
              • 
 
            
diff --git a/stable/generated/mpas_tools.mesh.mask.compute_lon_lat_region_masks.html b/stable/generated/mpas_tools.mesh.mask.compute_lon_lat_region_masks.html
index 76198a52..1d64bebb 100644
--- a/stable/generated/mpas_tools.mesh.mask.compute_lon_lat_region_masks.html
+++ b/stable/generated/mpas_tools.mesh.mask.compute_lon_lat_region_masks.html
@@ -166,7 +166,7 @@ 
            mpas_tools.mesh.mask.compute_lon_lat_region_masks
              
 
            • lon (numpy.ndarray) – A 1D array of longitudes in degrees between -180 and 180
              • 
 
            • lat (numpy.ndarray) – A 1D array of latitudes in degrees between -90 and 90
              • 
-
            • fcMask (geometric_features.FeatureCollection) – A feature collection containing features to use to create the mask
              • 
+
            • fcMask (geometric_features.FeatureCollection) – A feature collection containing features to use to create the mask
              • 
 
            • logger (logging.Logger, optional) – A logger for the output if not stdout
              • 
 
            • pool (multiprocessing.Pool, optional) – A pool for performing multiprocessing
              • 
 
            • chunkSize (int, optional) – The number of cells, vertices or edges that are processed in one
diff --git a/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html b/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html
index b0700e3b..03e24860 100644
--- a/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html
+++ b/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html
@@ -165,9 +165,9 @@ 
              mpas_tools.mesh.mask.compute_mpas_flood_fill_mask
 
              Parameters:
              
 
                
-
              • dsMesh (xarray.Dataset) – An MPAS mesh on which the masks should be created
                • 
-
              • fcSeed (geometric_features.FeatureCollection) – A feature collection containing points at which to start the flood fill
                • 
-
              • daGrow (xarray.DataArray, optional) – A data array of size nCells with a mask that is 1 anywhere the
+
              • dsMesh (xarray.Dataset) – An MPAS mesh on which the masks should be created
                • 
+
              • fcSeed (geometric_features.FeatureCollection) – A feature collection containing points at which to start the flood fill
                • 
+
              • daGrow (xarray.DataArray, optional) – A data array of size nCells with a mask that is 1 anywhere the
 flood fill is allowed to grow.  The default is that the mask is all
 ones.
                • 
 
              • logger (logging.Logger, optional) – A logger for the output if not stdout
                • 
diff --git a/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html b/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html
index 58677c9a..22943269 100644
--- a/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html
+++ b/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html
@@ -164,8 +164,8 @@ 
                mpas_tools.mesh.mask.compute_mpas_region_masks
 
                Parameters:
                
 
                  
-
                • dsMesh (xarray.Dataset) – An MPAS mesh on which the masks should be created
                  • 
-
                • fcMask (geometric_features.FeatureCollection) – A feature collection containing features to use to create the mask
                  • 
+
                • dsMesh (xarray.Dataset) – An MPAS mesh on which the masks should be created
                  • 
+
                • fcMask (geometric_features.FeatureCollection) – A feature collection containing features to use to create the mask
                  • 
 
                • maskTypes (tuple of {'cell', 'edge', 'vertex'}, optional) – Which type(s) of masks to make.  Masks are created based on whether
 the latitude and longitude associated with each of these locations
 (e.g. dsMesh.latCell and dsMesh.lonCell for 'cell') are
diff --git a/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html b/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html
index 59780b04..126293fa 100644
--- a/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html
+++ b/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html
@@ -164,8 +164,8 @@ 
                  mpas_tools.mesh.mask.compute_mpas_transect_masks
 
                  Parameters:
                  
 
                    
-
                  • dsMesh (xarray.Dataset) – An MPAS mesh on which the masks should be created
                    • 
-
                  • fcMask (geometric_features.FeatureCollection) – A feature collection containing features to use to create the mask
                    • 
+
                  • dsMesh (xarray.Dataset) – An MPAS mesh on which the masks should be created
                    • 
+
                  • fcMask (geometric_features.FeatureCollection) – A feature collection containing features to use to create the mask
                    • 
 
                  • earthRadius (float) – The radius of the earth in meters
                    • 
 
                  • maskTypes (tuple of {'cell', 'edge', 'vertex'}, optional) – Which type(s) of masks to make.  Masks are created based on whether
 the latitude and longitude associated with each of these locations
diff --git a/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html b/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html
index 21159fba..ae7d57b9 100644
--- a/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html
+++ b/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html
@@ -181,8 +181,8 @@ 
                    mpas_tools.ocean.coastline_alteration.add_critical_land_blockages
 
                    Parameters:
                    
 
                      
-
                    • dsMask (xarray.Dataset) – The mask to which critical blockages should be added
                      • 
-
                    • dsBlockages (xarray.Dataset) – The transect masks defining critical land regions that should block
+
                    • dsMask (xarray.Dataset) – The mask to which critical blockages should be added
                      • 
+
                    • dsBlockages (xarray.Dataset) – The transect masks defining critical land regions that should block
 ocean flow (e.g. the Antarctic Peninsula)
                      • 
 
                    
 
                    
diff --git a/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html b/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html
index fb00e55d..16619d74 100644
--- a/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html
+++ b/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html
@@ -182,8 +182,8 @@ 
                    mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask
 
                    Parameters:
                    
 
                      
-
                    • dsMask (xarray.Dataset) – A land-mask data set
                      • 
-
                    • dsMesh (xarray.Dataset) – MPAS Mesh data set
                      • 
+
                    • dsMask (xarray.Dataset) – A land-mask data set
                      • 
+
                    • dsMesh (xarray.Dataset) – MPAS Mesh data set
                      • 
 
                    • latitude_threshold (float, optional) – Minimum latitude, in degrees, for transect widening
                      • 
 
                    • nSweeps (int, optional) – Maximum number of sweeps to search for land-locked cells
                      • 
 
                    
diff --git a/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html b/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html
index f210d108..1c4efeb1 100644
--- a/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html
+++ b/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html
@@ -182,8 +182,8 @@ 
                    mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks
 
                    Parameters:
                    
 
                      
-
                    • dsMask (xarray.Dataset) – The mask to which critical blockages should be added
                      • 
-
                    • dsMesh (xarray.Dataset) – The transect masks defining critical land regions that should block
+
                    • dsMask (xarray.Dataset) – The mask to which critical blockages should be added
                      • 
+
                    • dsMesh (xarray.Dataset) – The transect masks defining critical land regions that should block
 ocean flow (e.g. the Antarctic Peninsula)
                      • 
 
                    • latitude_threshold (float) – Minimum latitude, degrees, for transect widening
                      • 
 
                    
diff --git a/stable/generated/mpas_tools.ocean.depth.compute_depth.html b/stable/generated/mpas_tools.ocean.depth.compute_depth.html
index ba726ac2..08a71a8f 100644
--- a/stable/generated/mpas_tools.ocean.depth.compute_depth.html
+++ b/stable/generated/mpas_tools.ocean.depth.compute_depth.html
@@ -180,7 +180,7 @@ 
                    mpas_tools.ocean.depth.compute_depth
 
                    Parameters:
                    
-
                    refBottomDepth (xarray.DataArray) – the depth of the bottom of each vertical layer in the initial state
+
                    refBottomDepth (xarray.DataArray) – the depth of the bottom of each vertical layer in the initial state
 (perfect z-level coordinate)
                    
 
                    
 
                    Returns:
                    
diff --git a/stable/generated/mpas_tools.ocean.depth.compute_zmid.html b/stable/generated/mpas_tools.ocean.depth.compute_zmid.html
index 5e2587e5..06c37a75 100644
--- a/stable/generated/mpas_tools.ocean.depth.compute_zmid.html
+++ b/stable/generated/mpas_tools.ocean.depth.compute_zmid.html
@@ -182,9 +182,9 @@ 
                    mpas_tools.ocean.depth.compute_zmid
 
                    Parameters:
                    
 
                      
-
                    • bottomDepth (xarray.DataArray) – the depth of the ocean bottom (positive)
                      • 
-
                    • maxLevelCell (xarray.DataArray) – the 1-based vertical index of the bottom of the ocean
                      • 
-
                    • layerThickness (xarray.DataArray) – the thickness of MPAS-Ocean layers (possibly as a function of time)
                      • 
+
                    • bottomDepth (xarray.DataArray) – the depth of the ocean bottom (positive)
                      • 
+
                    • maxLevelCell (xarray.DataArray) – the 1-based vertical index of the bottom of the ocean
                      • 
+
                    • layerThickness (xarray.DataArray) – the thickness of MPAS-Ocean layers (possibly as a function of time)
                      • 
 
                    • depth_dim (str, optional) – the name of the vertical dimension
                      • 
 
                    
 
                    
diff --git a/stable/generated/mpas_tools.ocean.moc.make_moc_basins_and_transects.html b/stable/generated/mpas_tools.ocean.moc.make_moc_basins_and_transects.html
index 13b4b66f..98658467 100644
--- a/stable/generated/mpas_tools.ocean.moc.make_moc_basins_and_transects.html
+++ b/stable/generated/mpas_tools.ocean.moc.make_moc_basins_and_transects.html
@@ -182,7 +182,7 @@ 
                    mpas_tools.ocean.moc.make_moc_basins_and_transects
 
                    Parameters:
                    
 
                      
-
                    • gf (geometric_features.GeometricFeatures) – An object that knows how to download and read geometric features
                      • 
+
                    • gf (geometric_features.GeometricFeatures) – An object that knows how to download and read geometric features
                      • 
 
                    • mesh_filename (str) – A file with MPAS mesh information
                      • 
 
                    • mask_and_transect_filename (str) – A file to write the MOC region masks and southern-boundary transects to
                      • 
 
                    • geojson_filename (str, optional) – A file to write MOC regions to
                      • 
diff --git a/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html b/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html
index 59c2d89e..f1bd2650 100644
--- a/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html
+++ b/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html
@@ -187,12 +187,12 @@ 
                      mpas_tools.ocean.transects.find_transect_levels_and_weights
 
                      Parameters:
                      
 
                      
diff --git a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html
index c7816948..90f902e9 100644
--- a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html
+++ b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html
@@ -183,9 +183,9 @@ 
                      mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes
 
                      Parameters:
                      
 
                        
-
                      • dsTransectTriangles (xarray.Dataset) – A dataset that defines triangles making up an MPAS-Ocean transect, the
+
                      • dsTransectTriangles (xarray.Dataset) – A dataset that defines triangles making up an MPAS-Ocean transect, the
 results of calling find_transect_levels_and_weights()
                        • 
-
                      • da (xarray.DataArray) – An MPAS-Ocean 3D field with dimensions nCells` and nVertLevels
+
                      • da (xarray.DataArray) – An MPAS-Ocean 3D field with dimensions nCells` and nVertLevels
 (possibly among others)
                        • 
 
                      
 
                      
diff --git a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html
index 0ef43560..374572ae 100644
--- a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html
+++ b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html
@@ -182,9 +182,9 @@ 
                      mpas_tools.ocean.transects.interp_mpas_to_transect_triangles
 
                      Parameters:
                      
 
                        
-
                      • dsTransectTriangles (xarray.Dataset) – A dataset that defines triangles making up an MPAS-Ocean transect, the
+
                      • dsTransectTriangles (xarray.Dataset) – A dataset that defines triangles making up an MPAS-Ocean transect, the
 results of calling find_transect_levels_and_weights()
                        • 
-
                      • da (xarray.DataArray) – An MPAS-Ocean 3D field with dimensions nCells` and nVertLevels
+
                      • da (xarray.DataArray) – An MPAS-Ocean 3D field with dimensions nCells` and nVertLevels
 (possibly among others)
                        • 
 
                      
 
                      
diff --git a/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html b/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html
index 13f6cfe9..7d820bfd 100644
--- a/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html
+++ b/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html
@@ -182,9 +182,9 @@ 
                      mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes
 
                      Parameters:
                      
 
                      
 
                      
 
                      Returns:
                      
diff --git a/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html b/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html
index 702a4c1f..d42ab648 100644
--- a/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html
+++ b/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html
@@ -183,9 +183,9 @@ 
                      mpas_tools.ocean.viz.plot_ocean_transects
 
                      Parameters:
                      
 
                        
-
                      • fc (geometric_features.FeatureCollection) – The transects to plot
                        • 
-
                      • ds (xarray.Dataset) – The MPAS-Ocean dataset to plot
                        • 
-
                      • ds_mesh (xarray.Dataset, optional) – The MPAS-Ocean mesh to use for plotting, the same as ds by default
                        • 
+
                      • fc (geometric_features.FeatureCollection) – The transects to plot
                        • 
+
                      • ds (xarray.Dataset) – The MPAS-Ocean dataset to plot
                        • 
+
                      • ds_mesh (xarray.Dataset, optional) – The MPAS-Ocean mesh to use for plotting, the same as ds by default
                        • 
 
                      • variable_list (list of str, optional) – The variables to plot
                        • 
 
                      • cmap (str, optional) – The name of a colormap to use
                        • 
 
                      • flip (book, optional) – Whether to flip the x axes of all transect plot
                        • 
diff --git a/stable/generated/mpas_tools.translate.center.html b/stable/generated/mpas_tools.translate.center.html
index a6afbd93..74af03db 100644
--- a/stable/generated/mpas_tools.translate.center.html
+++ b/stable/generated/mpas_tools.translate.center.html
@@ -163,7 +163,7 @@ 
                        mpas_tools.translate.center
 
                        Parameters:
                        
-
                        mesh (xarray.Dataset) – A planar mesh to translate
                        
+
                        mesh (xarray.Dataset) – A planar mesh to translate
                        
 
                        
 
 
                      
diff --git a/stable/generated/mpas_tools.translate.center_on_mesh.html b/stable/generated/mpas_tools.translate.center_on_mesh.html
index 53b2a85f..d96a41a0 100644
--- a/stable/generated/mpas_tools.translate.center_on_mesh.html
+++ b/stable/generated/mpas_tools.translate.center_on_mesh.html
@@ -164,8 +164,8 @@ 
                      mpas_tools.translate.center_on_mesh
 
                      Parameters:
                      
 
                        
-
                      • mesh (xarray.Dataset) – A planar mesh to translate
                        • 
-
                      • otherMesh (xarray.Dataset) – Another planar mesh whose center will become the center of this mesh.
+
                      • mesh (xarray.Dataset) – A planar mesh to translate
                        • 
+
                      • otherMesh (xarray.Dataset) – Another planar mesh whose center will become the center of this mesh.
 Uses xCell,yCell or, if those fields do not exist, will secondly try
 x1,y1 fields
                        • 
 
                      
diff --git a/stable/generated/mpas_tools.translate.translate.html b/stable/generated/mpas_tools.translate.translate.html
index 05a730ec..8c3f0a6f 100644
--- a/stable/generated/mpas_tools.translate.translate.html
+++ b/stable/generated/mpas_tools.translate.translate.html
@@ -164,7 +164,7 @@ 
                      mpas_tools.translate.translate
 
                      Parameters:
                      
 
                        
-
                      • mesh (xarray.Dataset) – A planar mesh to translate
                        • 
+
                      • mesh (xarray.Dataset) – A planar mesh to translate
                        • 
 
                      • xOffset (float, optional) – user-specified shift in the x-direction
                        • 
 
                      • yOffset (float, optional) – user-specified shift in the y-direction
                        • 
 
                      
diff --git a/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html b/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html
index a6d56a94..1bbc3c72 100644
--- a/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html
+++ b/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html
@@ -147,7 +147,7 @@ 
                      mpas_tools.viz.mesh_to_triangles.mesh_to_triangles
 
                      Parameters:
                      
 
                        
-
                      • dsMesh (xarray.Dataset) – An MPAS mesh
                        • 
+
                      • dsMesh (xarray.Dataset) – An MPAS mesh
                        • 
 
                      • periodicCopy (bool, optional) – Whether to make a periodic copy of triangles that cross -180/180 degrees
 longitude.  This is helpful when plotting triangles in a lon/lat space.
                        • 
 
                      
diff --git a/stable/generated/mpas_tools.viz.paraview_extractor.extract_vtk.html b/stable/generated/mpas_tools.viz.paraview_extractor.extract_vtk.html
index b4c9ef9e..76b1c145 100644
--- a/stable/generated/mpas_tools.viz.paraview_extractor.extract_vtk.html
+++ b/stable/generated/mpas_tools.viz.paraview_extractor.extract_vtk.html
@@ -233,7 +233,7 @@ 
                      mpas_tools.viz.paraview_extractor.extract_vtkbool, optional) – Whether to include mesh variables as well as time-series variables
 in the extraction
                      
-
                    • fc_region_mask (geometric_features.FeatureCollection, optional) – A feature collection used to define a mask.  The MPAS data is culled to
+
                    • fc_region_mask (geometric_features.FeatureCollection, optional) – A feature collection used to define a mask.  The MPAS data is culled to
 lie within the mask before conversion to VTK proceeds
                      • 
 
                    • temp_dir (str, optional) – If fc_region_mask is supplied, a temporary directory where the culled
 mesh and time series files are stored
                      • 
diff --git a/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html b/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html
index 7c5d2713..63771349 100644
--- a/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html
+++ b/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html
@@ -147,11 +147,11 @@ 
                      mpas_tools.viz.transects.find_planar_transect_cells_and_weights
 
                      Parameters:
                      
 
                        
-
                      • xTransect (xarray.DataArray) – The x points defining segments making up the transect
                        • 
-
                      • yTransect (xarray.DataArray) – The y points defining segments making up the transect
                        • 
-
                      • dsTris (xarray.Dataset) – A dataset that defines triangles, the results of calling
+
                      • xTransect (xarray.DataArray) – The x points defining segments making up the transect
                        • 
+
                      • yTransect (xarray.DataArray) – The y points defining segments making up the transect
                        • 
+
                      • dsTris (xarray.Dataset) – A dataset that defines triangles, the results of calling
 :py:func:`mpas_tools.viz.mesh_to_triangles.mesh_to_triangles()
                        • 
-
                      • dsMesh (xarray.Dataset) – A data set with the full MPAS mesh.
                        • 
+
                      • dsMesh (xarray.Dataset) – A data set with the full MPAS mesh.
                        • 
 
                      • tree (scipy.spatial.cKDTree) – A tree of edge centers from triangles making up an MPAS mesh, the return
 value from make_triangle_tree()
                        • 
 
                      • subdivisionRes (float, optional) – Resolution in m to use to subdivide the transect when looking for
diff --git a/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html b/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html
index 4d90736d..31fbb20f 100644
--- a/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html
+++ b/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html
@@ -147,11 +147,11 @@ 
                        mpas_tools.viz.transects.find_transect_cells_and_weights
 
                        Parameters: