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Makefile
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######################################################################
# Makefile - makefile to create sfdist #
# #
# Version 1.1.0 05 July 2019 #
# #
# Herbert J. Bernstein (yayahjb@gmail.com) #
# Lawrence C Andrews #
# #
# (C) Copyright 2016 - 2019 Herbert J. Bernstein, Lawrence C. Andrews#
# #
######################################################################
######################################################################
# #
# YOU MAY REDISTRIBUTE THE sfdist PACKAGE UNDER THE TERMS OF THE GPL #
# #
# ALTERNATIVELY YOU MAY REDISTRIBUTE THE sfdist API UNDER THE TERMS #
# OF THE LGPL #
# #
######################################################################
########################### GPL NOTICES ##############################
# #
# This program is free software; you can redistribute it and/or #
# modify it under the terms of the GNU General Public License as #
# published by the Free Software Foundation; either version 2 of #
# (the License, or (at your option) any later version. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# #
# You should have received a copy of the GNU General Public License #
# along with this program; if not, write to the Free Software #
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA #
# 02111-1307 USA #
# #
######################################################################
######################### LGPL NOTICES ###############################
# #
# This library is free software; you can redistribute it and/or #
# modify it under the terms of the GNU Lesser General Public #
# License as published by the Free Software Foundation; either #
# version 2.1 of the License, or (at your option) any later version. #
# #
# This library is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU #
# Lesser General Public License for more details. #
# #
# You should have received a copy of the GNU Lesser General Public #
# License along with this library; if not, write to the Free #
# Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, #
# MA 02110-1301 USA #
# #
######################################################################
ifeq ($(OS),Windows_NT)
uname_S := Windows
else
uname_S := $(shell uname -s)
endif
ifeq ($(uname_S), Darwin)
RCPP_HEADERS ?= /Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include
RCPPARMA_HEADERS ?= /Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include
RCPPPARA_HEADERS ?= /Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppParallel/include
RPATH_HEADERS ?= /Library/Frameworks/R.framework/Versions/3.3/Headers
RPATH_LIBRARIES ?= /Library/Frameworks/R.framework/Versions/3.3/Resources/lib
else
RCPP_HEADERS ?= /usr/local/lib/R/site-library/Rcpp/include
RCPPARMA_HEADERS ?= /usr/local/lib/R/site-library/RcppArmadillo/include
RCPPPARA_HEADERS ?= /usr/local/lib/R/site-library/RcppParallel/include
RPATH_HEADERS ?= /usr/share/R/include
RPATH_LIBRARIES ?= /usr/lib/R/lib
endif
CFLAGS ?= -g -O3 -fPIC -fopenmp
CXXFLAGS ?= -g -O3 -std=gnu++11 -fPIC -fopenmp
#CFLAGS ?= -g -O0 -fPIC -fopenmp
#CXXFLAGS ?= -g -O0 -std=gnu++11 -fPIC -fopenmp
LIBSOURCES = \
B4.cpp \
C3.cpp \
CellInputData.cpp \
D7.cpp \
D7_Boundary.cpp \
D7_BoundaryList.cpp \
D7_Subboundary.cpp \
D7_ClassifySubboundaries.cpp\
G6.cpp \
inverse.cpp \
LatticeConverter.cpp \
LRL_Cell.cpp \
LRL_Cell_Degrees.cpp \
LRL_CoordinateConversionMatrices.cpp \
LRL_StringTools.cpp \
MatD7.cpp \
MatG6.cpp \
MatS6.cpp \
MatN.cpp \
MatMN.cpp \
Mat66.cpp \
MaximaTools.cpp \
PrintTable.cpp \
ProjectorTools.cpp \
RandTools.cpp \
ReadCellData.cpp \
Reducer.cpp \
S6.cpp \
S6Dist.cpp \
Selling.cpp \
S6M_SellingReduce.h \
VectorTools.h \
VecN.h VecN.cpp \
Vec_N_Tools.cpp \
VectorTools.cpp \
vector_3d.cpp
DEPENDENCIES = \
B4.h B4.cpp \
CellInputData.h CellInputData.cpp \
D7.h D7.cpp \
D7_Boundary.h D7_Boundary.cpp \
D7_BoundaryList.h D7_BoundaryList.cpp \
D7_Subboundary.h D7_Subboundary.cpp \
D7_ClassifySubboundaries.h D7_ClassifySubboundaries.cpp\
G6.h G6.cpp \
inverse.h inverse.cpp \
LatticeConverter.h LatticeConverter.cpp \
LRL_Cell.h LRL_Cell.cpp \
LRL_Cell_Degrees.h \
LRL_Cell_Degrees.cpp \
LRL_CoordinateConversionMatrices.h LRL_CoordinateConversionMatrices.cpp \
LRL_StringTools.h LRL_StringTools.cpp \
MatD7.h MatD7.cpp \
MatG6.h MatG6.cpp \
MatS6.h MatS6.cpp \
MatN.h MatN.cpp \
MatMN.h MatMN.cpp \
Mat66.h Mat66.cpp \
MaximaTools.h MaximaTools.cpp \
PrintTable.h PrintTable.cpp \
ProjectorTools.h ProjectorTools.cpp \
RandTools.h RandTools.cpp \
ReadCellData.h ReadCellData.cpp \
Reducer.h Reducer.cpp \
S6.h S6.cpp \
S6M_SellingReduce.h \
Vec_N_Tools.h VectorTools.h \
VecN.h VecN.cpp \
Vec_N_Tools.cpp \
VectorTools.cpp \
vector_3d.cpp
all: ncdist ncdist_mat ncsqdist ncsqdist_mat \
d7dist D7Test dc10dist dc10dist_mat dc10sqdist dc10sqdist_mat \
dc7dist dc7dist_mat dc7sqdist dc7sqdist_mat dc7unsrtdist dc7unsrtdist_mat dc7unsrtsqdist dc7unsrtsqdist_mat \
Follower \
rcpp_ncdist.so rcpp_d7dist.so rcpp_s6dist.so rcpp_cs6dist.so rcpp_cs6dist_in_g6.so \
cs6dist_app cs6dist_app2 s6dist_app cs6dist_mat cs6dist_dist cs6_s6_test
tests: all
./Rtests.bash > Rtests.lst
-diff -bu Rtests.lst Rtests.out
./dist_tests.bash > dist_tests.lst
-diff -bu dist_tests.lst dist_tests.out
CS6Dist_func_.o: CS6Dist_func.cpp S6.h C3.h S6Dist.h Selling.h \
S6Dist_func.h Reducer.h Delone.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h \
CS6Dist.h CS6Dist.c VecN.h Vec_N_Tools.h
g++ $(CXXFLAGS) -c -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
CS6Dist_func.cpp -o CS6Dist_func_.o
CS6Dist_.o: S6.h C3.h S6Dist.h Selling.h \
S6Dist_func.h Reducer.h Delone.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h \
CS6Dist.h CS6Dist.c VecN.h Vec_N_Tools.h
gcc $(CFLAGS) -c -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
CS6Dist.c -o CS6Dist_.o
cs6dist_app: CS6Dist_func_.o CS6Dist_.o cs6dist_app.cpp \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o cs6dist_app cs6dist_app.cpp CS6Dist_func_.o CS6Dist_.o \
-I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) Delone.cpp \
-lpthread
cs6dist_app2: CS6Dist_func_.o CS6Dist_.o cs6dist_app2.cpp S6_primredcell.c \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o cs6dist_app2 cs6dist_app2.cpp CS6Dist_func_.o CS6Dist_.o \
-I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) Delone.cpp S6_primredcell.c \
-lpthread
cs6_s6_test: CS6Dist_func_.o CS6Dist_.o S6Dist_func_.o cs6_s6_test.cpp \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o cs6_s6_test cs6_s6_test.cpp CS6Dist_func_.o CS6Dist_.o S6Dist_func_.o \
-I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) Delone.cpp \
-lpthread
cs6dist_mat: CS6Dist_func_.o CS6Dist_.o cs6dist_mat.cpp \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o cs6dist_mat cs6dist_mat.cpp CS6Dist_func_.o CS6Dist_.o \
-I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) Delone.cpp \
-lpthread
cs6dist_dist: CS6Dist_func_.o CS6Dist_.o cs6dist_dist.cpp \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o cs6dist_dist cs6dist_dist.cpp CS6Dist_func_.o CS6Dist_.o \
-I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) Delone.cpp \
-lpthread
S6Dist_func_.o: S6Dist_func.cpp S6.h C3.h S6Dist.h Selling.h \
S6Dist_func.h Reducer.h Delone.h LRL_Cell_Degrees.h NCDist.h VecN.h Vec_N_Tools.h
g++ $(CXXFLAGS) -c -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) S6Dist_func.cpp -o S6Dist_func_.o
s6dist_app: S6Dist_func_.o s6dist_app.cpp \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o s6dist_app s6dist_app.cpp S6Dist_func_.o \
-I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) Delone.cpp \
-lpthread
ncdist_mat_.o: ncdist_mat.cpp Reducer.h Delone.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h VecN.h Vec_N_Tools.h
g++ $(CXXFLAGS) -c -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) ncdist_mat.cpp -o ncdist_mat_.o
ncdist_mat: ncdist_mat_.o \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o ncdist_mat ncdist_mat_.o -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) Delone.cpp \
-lpthread
ncsqdist_mat: ncdist_mat
cp ncdist_mat ncsqdist_mat
dc7dist_mat: ncdist_mat
cp ncdist_mat dc7dist_mat
dc7sqdist_mat: ncdist_mat
cp ncdist_mat dc7sqdist_mat
dc7unsrtdist_mat: ncdist_mat
cp ncdist_mat dc7unsrtdist_mat
dc7unsrtsqdist_mat: ncdist_mat
cp ncdist_mat dc7unsrtsqdist_mat
dc10dist_mat: ncdist_mat
cp ncdist_mat dc10dist_mat
dc10sqdist_mat: ncdist_mat
cp ncdist_mat dc10sqdist_mat
ncdist_.o: ncdist.cpp Reducer.h Delone.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h VecN.h Vec_N_Tools.h
g++ $(CXXFLAGS) -c -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) ncdist.cpp -o ncdist_.o
ncdist: ncdist_.o \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o ncdist ncdist_.o -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES)Delone.cpp \
-lpthread
ncsqdist: ncdist
cp ncdist ncsqdist
dc7dist: ncdist
cp ncdist dc7dist
dc7sqdist: ncdist
cp ncdist dc7sqdist
dc7unsrtdist: ncdist
cp ncdist dc7unsrtdist
dc7unsrtsqdist: ncdist
cp ncdist dc7unsrtsqdist
dc10dist: ncdist
cp ncdist dc10dist
dc10sqdist: ncdist
cp ncdist dc10sqdist
d7dist_.o: d7dist.cpp Reducer.h Delone.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h VecN.h Vec_N_Tools.h
g++ $(CXXFLAGS) -c -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) d7dist.cpp -o d7dist_.o
d7dist: d7dist_.o \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o d7dist d7dist_.o -I $(RCPPARMA_HEADERS) -I $(RCPPPARA_HEADERS) \
$(LIBSOURCES) \
D7Dist.c Delone.cpp \
-lpthread
Reducer.o: Reducer.cpp Reducer.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h
g++ $(CXXFLAGS) -I$(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I$(RCPP_HEADERS) \
-I$(RCPPPARA_HEADERS) \
-I$(RCPPARMA_HEADERS) -c Reducer.cpp -o Reducer.o
Delone.o: Delone.cpp Delone.h Reducer.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h
g++ $(CXXFLAGS) -I$(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I$(RCPP_HEADERS) \
-I$(RCPPPARA_HEADERS) \
-I$(RCPPARMA_HEADERS) -c Delone.cpp -o Delone.o
LRL_Cell.o: LRL_Cell.cpp LRL_Cell_Degrees.cpp Reducer.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h
g++ $(CXXFLAGS) -I$(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I$(RCPP_HEADERS) \
-I$(RCPPPARA_HEADERS) \
-I$(RCPPARMA_HEADERS) -c LRL_Cell.cpp -o LRL_Cell.o
LRL_Cell_Degrees.o: LRL_Cell.cpp LRL_Cell_Degrees.cpp Reducer.h LRL_Cell.h LRL_Cell_Degrees.h NCDist.h
g++ $(CXXFLAGS) -I$(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I$(RCPP_HEADERS) \
-I$(RCPPPARA_HEADERS) \
-I$(RCPPARMA_HEADERS) -c LRL_Cell_Degrees.cpp -o LRL_Cell_Degrees.o
rcpp_s6dist.so: rcpp_s6dist.cpp \
$(DEPENDENCIES) \
S6Dist_func.cpp Delone.h Delone.cpp
g++ $(CXXFLAGS) -shared -o rcpp_s6dist.so -I $(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I $(RCPP_HEADERS) -I $(RCPPPARA_HEADERS) -I$(RCPPARMA_HEADERS) rcpp_s6dist.cpp S6Dist_func.cpp Delone.cpp \
$(LIBSOURCES) \
-L$(RPATH_LIBRARIES) -lR -lblas -llapack -lpthread
rcpp_cs6dist.so: rcpp_cs6dist.cpp \
CS6Dist.h CS6Dist.c $(DEPENDENCIES) CS6Dist_func.cpp S6Dist_func.cpp Delone.cpp
g++ $(CXXFLAGS) -shared -o rcpp_cs6dist.so -I $(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I $(RCPP_HEADERS) -I $(RCPPPARA_HEADERS) -I$(RCPPARMA_HEADERS) \
rcpp_cs6dist.cpp CS6Dist.c CS6Dist_func.cpp S6Dist_func.cpp Delone.cpp \
$(LIBSOURCES) \
-L$(RPATH_LIBRARIES) -lR -lblas -llapack -lpthread
rcpp_cs6dist_in_g6.so: rcpp_cs6dist_in_g6.cpp \
CS6Dist.h CS6Dist.c $(DEPENDENCIES) CS6Dist_func.cpp S6Dist_func.cpp Delone.cpp
g++ $(CXXFLAGS) -shared -o rcpp_cs6dist_in_g6.so -I $(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I $(RCPP_HEADERS) -I $(RCPPPARA_HEADERS) -I$(RCPPARMA_HEADERS) \
rcpp_cs6dist_in_g6.cpp CS6Dist.c CS6Dist_func.cpp S6Dist_func.cpp Delone.cpp \
$(LIBSOURCES) \
-L$(RPATH_LIBRARIES) -lR -lblas -llapack -lpthread
rcpp_ncdist.so: rcpp_ncdist.cpp \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -shared -o rcpp_ncdist.so -I$(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC \
-I$(RCPP_HEADERS) -I$(RCPPPARA_HEADERS) -I$(RCPPARMA_HEADERS) rcpp_ncdist.cpp \
Delone.cpp \
$(LIBSOURCES) \
-L$(RPATH_LIBRARIES) -lR -lblas -llapack -lpthread
rcpp_d7dist.so: rcpp_d7dist.cpp D7Dist.h D7Dist.c Delone.cpp \
$(DEPENDENCIES)
g++ $(CXXFLAGS) -shared -o rcpp_d7dist.so \
-I$(RPATH_HEADERS) -DNDEBUG -fpic -O2 -fPIC -I$(RCPP_HEADERS) \
-I$(RCPPPARA_HEADERS) -I$(RCPPARMA_HEADERS) rcpp_d7dist.cpp D7Dist.c Delone.cpp \
$(LIBSOURCES) \
-L$(RPATH_LIBRARIES) -lR -lblas -llapack -lpthread
NCDist.o: NCDist.c NCDist.h
gcc $(CFLAGS) -c NCDist.c
D7Dist.o: D7Dist.c D7Dist.h
gcc $(CFLAGS) -c D7Dist.c
D7Test: D7Test.cpp D7Dist.h d7dist.cpp D7Dist.o NCDist.o \
$(DEPENDENCIES) Delone.h Delone.cpp
g++ $(CXXFLAGS) -o D7Test D7Test.cpp D7Dist.o NCDist.o Delone.cpp \
$(LIBSOURCES) \
-lpthread
Follower: \
$(DEPENDENCIES) \
D7Dist.o \
Delone.cpp \
CreateFileName.h CreateFileName.cpp \
MapBoundaryStrings2Colors.h MapBoundaryStrings2Colors.cpp \
FileOperations.cpp FileOperations.cpp \
FollowerConstants.h FollowerConstants.cpp \
FollowerIO.h FollowerIO.cpp \
FollowerTools.h FollowerTools.cpp \
Follower_main.cpp \
NCDist.o \
FileOperations.h FileWriter.h Follow.h Follower.h \
FollowerConstants.h FollowerIO.h FollowerTools.h \
LinearAxis.h LinearAxis.cpp \
ReadGlobalData.h ReadGlobalData.cpp
g++ $(CXXFLAGS) -o Follower \
$(LIBSOURCES) \
D7Dist.o \
Delone.cpp \
CreateFileName.cpp \
MapBoundaryStrings2Colors.cpp \
FileOperations.cpp \
FollowerConstants.cpp FollowerIO.cpp FollowerTools.cpp \
LinearAxis.cpp \
Follower_main.cpp \
ReadGlobalData.cpp \
NCDist.o
MinimalS6Dist: cqrlib.c MatN.cpp S6.cpp C3.cpp Selling.cpp \
VecN.h cqrlib.h MatN.h S6Dist.cpp Selling.h \
Vec_N_Tools.cpp inverse.cpp MinimalS6Dist.cpp \
S6Dist.h TNear.h Vec_N_Tools.h \
inverse.h S6.h C3.h triple.h \
vector_3d.cpp rhrand.h VecN.cpp vector_3d.h
g++ $(CXXFLAGS) -o MinimalS6Dist \
MinimalS6Dist.cpp \
inverse.cpp S6Dist.cpp VecN.cpp vector_3d.cpp \
MatN.cpp S6.cpp C3.cpp Selling.cpp Vec_N_Tools.cpp
clean:
-@rm -rf *.o
-@rm -rf *.so
-@rm -rf D7Test
-@rm -rf Follower
distclean: clean
-@rm -rf bin
-@rm -rf build
-@rm -rf CS6Dist_func_.o
-@rm -rf cs6dist_app
-@rm -rf cs6_s6_test
-@rm -rf cs6dist_mat
-@rm -rf cs6dist_dist
-@rm -rf d7dist
-@rm -rf d7dist_.o
-@rm -rf Delone.o
-@rm -rf D7Test
-@rm -rf dc7dist
-@rm -rf dc7sqdist
-@rm -rf dc7dist_mat
-@rm -rf dc7sqdist_mat
-@rm -rf Follower
-@rm -rf lib
-@rm -rf LRL_Cell.o
-@rm -rf LRL_Cell_Degrees.o
-@rm -rf MinimalS6Dist
-@rm -rf ncdist
-@rm -rf ncdist_mat_.o
-@rm -rf ncdist_mat
-@rm -rf ncdist_.o
-@rm -rf ncsqdist
-@rm -rf dc7dist
-@rm -rf dc7sqqdist
-@rm -rf dc7unsrtdist
-@rm -rf dc7unsrtsqdist
-@rm -rf dc10dist
-@rm -rf dc10sqdist
-@rm -rf ncdist_mat
-@rm -rf ncsqdist_mat
-@rm -rf dc7dist_mat
-@rm -rf dc7sqqdist_mat
-@rm -rf dc7unsrtdist_mat
-@rm -rf dc7unsrtsqdist_mat
-@rm -rf dc10dist_mat
-@rm -rf dc10sqdist_mat
-@rm -rf Reducer.o
-@rm -rf S6Dist_func_.o
-@rm -rf s6dist_app
-@rm -rf rcpp_s6dist.so
-@rm -rf rcpp_cs6dist.so
-@rm -rf rcpp_cs6dist_in_g6.so
-@rm -rf rcpp_ncdist.so
-@rm -rf rcpp_d7dist.so