README.md

segmentation_evaluation

Evaluation tools for NHP segmentations. Data organisation should follow BIDS derivatives.

Procedure:

1a) format_man_dseg for manual seg (merge hemi, redinx, padding) 1b) format_auto_dseg (reindex tissues for 3 classes mostly, for all auto_analysis_names defined in )

2. eval dataset
3. average_errors

(if multiple datasets) 4) merge_average_errors