From 2d4dca3afd335136e3312ffc2b5ef610d233dab5 Mon Sep 17 00:00:00 2001 From: David Meunier Date: Thu, 8 Feb 2024 09:34:55 +0100 Subject: [PATCH] docker run --- .github/workflows/build_on_prerelease.yml | 12 +++++++++--- skullTo3d/_version.py | 2 +- 2 files changed, 10 insertions(+), 4 deletions(-) diff --git a/.github/workflows/build_on_prerelease.yml b/.github/workflows/build_on_prerelease.yml index 6dafb6c..0c0af9c 100644 --- a/.github/workflows/build_on_prerelease.yml +++ b/.github/workflows/build_on_prerelease.yml @@ -96,7 +96,9 @@ jobs: - name: Running all test pipelines (ANTS cenir macaque petra) run: | - python segment_skull.py -data /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cenir-macaque-petra -out /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cenir-macaque-petra/results -soft ANTS_prep_skull -species macaque -sub Magneto -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad + + docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest + segment_skull -data /data/cenir-macaque-petra -out /data/cenir-macaque-petra/results -soft ANTS_prep_skull -species macaque -sub Magneto -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cenir-macaque-petra/results @@ -142,7 +144,9 @@ jobs: - name: Running all test pipelines (ANTS cerimed macaque CT) run: | - python segment_skull.py -data /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-macaque-ct -out /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-macaque-ct/results -soft ANTS_prep_skull -species macaque -sub Marvin -ses 01 -brain_dt T1 T2 -skull_dt T1 CT -deriv -pad + + docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest + segment_skull -data /data/cerimed-macaque-ct -out /datat/cerimed-macaque-ct/results -soft ANTS_prep_skull -species macaque -sub Marvin -ses 01 -brain_dt T1 T2 -skull_dt T1 CT -deriv -pad ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-macaque-ct/results @@ -190,7 +194,9 @@ jobs: - name: Running all test pipelines (ANTS cerimed macaque CT) run: | - python segment_skull.py -data /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-marmo-petra -out /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-marmo-petra/results -soft ANTS_noseg_skull -species marmo -sub Paolina -ses 01 -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad + + docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest + segment_skull -data /data/cerimed-marmo-petra -out /data/results -soft ANTS_noseg_skull -species marmo -sub Paolina -ses 01 -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-marmo-petra/results diff --git a/skullTo3d/_version.py b/skullTo3d/_version.py index bd414db..c9db18a 100644 --- a/skullTo3d/_version.py +++ b/skullTo3d/_version.py @@ -1,2 +1,2 @@ -__version__ = '0.0.1-rc7' +__version__ = '0.0.1-rc8'