From f466264919d09f969926d051829860fcbc505cd4 Mon Sep 17 00:00:00 2001 From: David Meunier Date: Fri, 9 Feb 2024 15:48:43 +0100 Subject: [PATCH] ubuntu:latest (but was accessing niolon16 ! ) nprocs=1 for all macaque --- .github/workflows/build_on_prerelease.yml | 16 ++++++---------- skullTo3d/_version.py | 2 +- 2 files changed, 7 insertions(+), 11 deletions(-) diff --git a/.github/workflows/build_on_prerelease.yml b/.github/workflows/build_on_prerelease.yml index 0a38f2c..15b7ffe 100644 --- a/.github/workflows/build_on_prerelease.yml +++ b/.github/workflows/build_on_prerelease.yml @@ -68,9 +68,7 @@ jobs: run-pretest-ants-macaque-petra: name: Running all existing pipelines in skullTo3d_CI.zip (ANTS macaque petra) needs: docker-build - runs-on: self-hosted - timeout-minutes: 1440 - + runs-on: ubuntu-latest steps: - name: Pull latest docker image run: @@ -96,7 +94,7 @@ jobs: - name: Running all test pipelines (ANTS cenir macaque petra) run: | - docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cenir-macaque-petra -out /data/cenir-macaque-petra/results -soft ANTS_prep_skull -species macaque -sub Magneto -brain_dt T1 T2 -skull_dt petra -deriv -pad + docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cenir-macaque-petra -out /data/cenir-macaque-petra/results -soft ANTS_prep_skull -species macaque -sub Magneto -brain_dt T1 T2 -skull_dt petra -deriv -pad -nprocs 1 ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cenir-macaque-petra/results @@ -113,8 +111,7 @@ jobs: run-pretest-ants-macaque-ct: name: Running all existing pipelines in skullTo3d_CI.zip (ANTS macaque CT) needs: docker-build - runs-on: self-hosted - timeout-minutes: 1440 + runs-on: ubuntu-latest steps: - name: Pull latest docker image @@ -143,7 +140,7 @@ jobs: - name: Running all test pipelines (ANTS cerimed macaque CT) run: | - docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cerimed-macaque-ct -out /data/cerimed-macaque-ct/results -soft ANTS_prep_skull -species macaque -sub Marvin -ses 01 -brain_dt T1 T2 -skull_dt CT -deriv -pad + docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cerimed-macaque-ct -out /data/cerimed-macaque-ct/results -soft ANTS_prep_skull -species macaque -sub Marvin -ses 01 -brain_dt T1 T2 -skull_dt CT -deriv -pad -nprocs 1 ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-macaque-ct/results @@ -161,8 +158,7 @@ jobs: run-pretest-ants-marmo-petra: name: Running all existing pipelines in skullTo3d_CI.zip (ANTS marmo petra) needs: docker-build - runs-on: self-hosted - timeout-minutes: 1440 + runs-on: ubuntu-latest steps: - name: Pull latest docker image @@ -190,7 +186,7 @@ jobs: - name: Running all test pipelines (ANTS cerimed marmo petra) run: | - docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cerimed-marmo-petra -out /data/cerimed-marmo-petra/results -soft ANTS_noseg_skull -species marmo -sub Paolina -ses 01 -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad + docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cerimed-marmo-petra -out /data/cerimed-marmo-petra/results -soft ANTS_noseg_skull -species marmo -sub Paolina -ses 01 -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad -nprocs 1 ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-marmo-petra/results diff --git a/skullTo3d/_version.py b/skullTo3d/_version.py index 9828412..89154e2 100644 --- a/skullTo3d/_version.py +++ b/skullTo3d/_version.py @@ -1 +1 @@ -__version__ = '0.0.1-rc14' +__version__ = '0.0.1-rc15'