diff --git a/alpharaw/mzml.py b/alpharaw/mzml.py index af113bf..7c49ded 100644 --- a/alpharaw/mzml.py +++ b/alpharaw/mzml.py @@ -12,7 +12,7 @@ class MzMLReader(MSData_Base): """ Load mzml file as `:class:`MSData_Base` structure. - This reader will be registered as "mzml" + This reader will be registered as "mzml" in :obj:`alphraw.ms_data_base.ms_reader_provider`. @@ -31,14 +31,14 @@ def _import( mzml_file_path: str, ) -> dict: """ - Implementation of :func:`alpharaw.ms_data_base.MSData_Base._import` interface, + Implementation of :func:`alpharaw.ms_data_base.MSData_Base._import` interface, which will be called by :func:`alpharaw.ms_data_base.MSData_Base.import_raw`, the main entry of :class:`alpharaw.ms_data_base.MSData_Base` sub-classes. Parameters ---------- mzml_file_path : str - Absolute or relative path of the mzml file. + Absolute or relative path of the mzml file. For testing purpose, this can be pyteomics `MzML` object as well. Returns diff --git a/alpharaw/sciex.py b/alpharaw/sciex.py index 3621819..ed1c922 100644 --- a/alpharaw/sciex.py +++ b/alpharaw/sciex.py @@ -8,7 +8,7 @@ class SciexWiffData(MSData_Base): """ Load Sciex Wiff data as :class:`MSData_Base` data structure. - This reader will be registered as "sciex", "sciex_wiff", and "sciex_raw" + This reader will be registered as "sciex", "sciex_wiff", and "sciex_raw" in :obj:`alpharaw.ms_data_base.ms_reader_provider`. Parameters