From 7aec8ee92120f8059597921dd3ac8566344d673f Mon Sep 17 00:00:00 2001 From: ibludau Date: Mon, 8 Jan 2024 12:43:49 +0100 Subject: [PATCH] Update README.md update publication link --- README.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index b648a52..5061171 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,7 @@ An open-source Python package for integrating information from predicted protein --- ## About -An open-source Python package for integrating information from predicted protein structures deposited in the [AlphaFold database](https://alphafold.ebi.ac.uk/) with proteomics data and specifically with post-translational modifications (PTMs). PTMs on 3D protein structures can be visualised by [AlphaMap](https://github.com/MannLabs/alphamap). +An open-source Python package for integrating information from predicted protein structures deposited in the [AlphaFold database](https://alphafold.ebi.ac.uk/) with proteomics data and specifically with post-translational modifications (PTMs). You can find a detailed description of the tool and its capabilities to generate biological insights in ["The structural context of PTMs at a proteome wide scale" by Bludau et al. (2022)](https://doi.org/10.1101/2022.02.23.481596). The complete anlaysis workflow of this study performed with structuremap can be found [here](https://github.com/MannLabs/structuremap_analysis). --- ## License @@ -115,7 +115,9 @@ In case of issues, check out the following: --- ## Citing structuremap -If you use structuremap for your work, please cite our paper on biorxiv: https://www.biorxiv.org/content/10.1101/2022.02.23.481596v1 +If you use structuremap for your work, please cite our publication: + +Bludau I, et al. (2022) The structural context of posttranslational modifications at a proteome-wide scale. PLOS Biology 20(5): e3001636. https://doi.org/10.1371/journal.pbio.3001636 --- ## How to contribute