How to Create HapMap_3_r3 ( bim, bed and fam )

[Kiran936]

Hi,

I am new to GWAS, I have 100+ exome SNV annotated files, i want to create same bim, bed and fam files.

Can you/anyone pls help me with how ( bim, bed and fam ) are created for HapMap_3_r3 from hapmad Db, that will help me a lot because those are most important inputs for further analysis even before Step1.

[dalbrach]

Also of note, http://hapmap.ncbi.nlm.nih.gov/downloads/genotypes/2010-05_phaseIII/plink_format/ is now down, so I am unable to view the original hapmap files. Any help would be appreciated.