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What does the variable mean #1

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pxxiao-hz opened this issue Aug 30, 2021 · 0 comments

pxxiao-hz commented Aug 30, 2021 •

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Hello,
When I use this software, I have some doubts:

What does $out_name mean?
When this process is applied to multiple species, how should this process be run? I thought of using loops, but the reads mapping step would be repeated. I am very confused.
How is the consensus sequence of each transposon family obtained. The results of RepeatModoler will have many consensus sequences, can you tell me how to filter it?

Thank you for developing a fast and efficient process.

Best wishes!

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