From 11df94ddcdfd97ed382383291483505eb55b060b Mon Sep 17 00:00:00 2001 From: David JM Date: Wed, 11 Aug 2021 10:38:31 -0700 Subject: [PATCH] v0.5.9: bug fixes affecting human and pass1c --- DESCRIPTION | 4 ++-- NEWS.md | 5 +++++ R/metabolomics_qc.R | 19 ++++++++++--------- docs/404.html | 2 +- docs/LICENSE-text.html | 2 +- docs/articles/index.html | 2 +- docs/articles/other_functions.html | 4 ++-- docs/articles/qc_metabolomics.html | 4 ++-- docs/articles/qc_proteomics.html | 4 ++-- docs/authors.html | 2 +- docs/index.html | 2 +- docs/news/index.html | 10 +++++++++- docs/notes_developers.html | 2 +- docs/pkgdown.yml | 2 +- docs/reference/assay_abbr.html | 2 +- docs/reference/assay_codes.html | 2 +- docs/reference/assay_order.html | 2 +- docs/reference/bic_animal_tissue_code.html | 2 +- docs/reference/check_failedsamples.html | 2 +- docs/reference/check_manifest_rawdata.html | 2 +- .../reference/check_metadata_metabolites.html | 2 +- docs/reference/check_metadata_samples.html | 2 +- docs/reference/check_ratio_proteomics.html | 2 +- docs/reference/check_results.html | 2 +- docs/reference/check_rii_proteomics.html | 2 +- .../check_vial_metadata_proteomics.html | 2 +- docs/reference/check_viallabel_dmaqc.html | 2 +- .../reference/combine_metabolomics_batch.html | 2 +- docs/reference/filter_required_columns.html | 2 +- docs/reference/get_and_validate_mdd.html | 2 +- docs/reference/group_abbr.html | 2 +- docs/reference/group_cols.html | 2 +- docs/reference/index.html | 2 +- docs/reference/load_metabolomics_batch.html | 2 +- docs/reference/load_proteomics.html | 2 +- docs/reference/merge_all_metabolomics.html | 2 +- .../merge_metabolomics_metadata.html | 2 +- .../merge_phenotype_metabolomics.html | 2 +- .../metabolomics_data_dictionary.html | 2 +- .../reference/metadata_metabolites_named.html | 2 +- .../metadata_metabolites_unnamed.html | 2 +- docs/reference/metadata_sample_named.html | 2 +- docs/reference/metadata_sample_unnamed.html | 2 +- docs/reference/open_file.html | 2 +- docs/reference/phenotypes_pass1a06_short.html | 2 +- .../reference/plot_basic_metabolomics_qc.html | 2 +- docs/reference/remove_empty_columns.html | 2 +- docs/reference/remove_empty_rows.html | 2 +- docs/reference/results_named.html | 2 +- docs/reference/results_unnamed.html | 2 +- docs/reference/sex_abbr.html | 2 +- docs/reference/sex_cols.html | 2 +- docs/reference/tissue_abbr.html | 2 +- docs/reference/tissue_cols.html | 2 +- docs/reference/tissue_order.html | 2 +- docs/reference/validate_assay.html | 2 +- docs/reference/validate_batch.html | 2 +- docs/reference/validate_cas.html | 2 +- docs/reference/validate_metabolomics.html | 2 +- docs/reference/validate_phase.html | 2 +- docs/reference/validate_processFolder.html | 2 +- docs/reference/validate_proteomics.html | 2 +- docs/reference/validate_tissue.html | 2 +- .../write_metabolomics_releases.html | 2 +- docs/reference/write_proteomics_releases.html | 2 +- 65 files changed, 90 insertions(+), 76 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index f7060116..28e58434 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: MotrpacBicQC Type: Package Title: QC/QA functions for the MoTrPAC community -Version: 0.5.8 -Date: 2021-08-06 +Version: 0.5.9 +Date: 2021-08-10 Author: MoTrPAC Bioinformatics Center Maintainer: David Jimenez-Morales Description: R Package for the analysis of MoTrPAC datasets. diff --git a/NEWS.md b/NEWS.md index e7bb78a2..f5e46325 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +# MotrpacBicQC 0.5.9 (2021-08-10) + +* Adjustments for PASS1C-06 +* Bug fixes affecting HUMAN phase processing + # MotrpacBicQC 0.5.8 (2021-08-06) * New Metabolomics QC plots: number and proportion of named vs unnamed features identified diff --git a/R/metabolomics_qc.R b/R/metabolomics_qc.R index fc5ecfd4..a35323ff 100644 --- a/R/metabolomics_qc.R +++ b/R/metabolomics_qc.R @@ -553,6 +553,12 @@ validate_metabolomics <- function(input_results_folder, phase <- validate_phase(input_results_folder) tissue_code <- validate_tissue(input_results_folder) batch_folder <- validate_batch(input_results_folder) + + if( !is.null(dmaqc_phase2validate) ){ + phase2check <- dmaqc_phase2validate + }else{ + phase2check <- phase + } # issue_count----- ic <- 0 @@ -574,10 +580,10 @@ validate_metabolomics <- function(input_results_folder, input_results_folder <- normalizePath(input_results_folder) - input_folder_short <- regmatches(input_results_folder, regexpr("PASS.*PROCESSED_[0-9]{8}", input_results_folder)) + input_folder_short <- regmatches(input_results_folder, regexpr("(HUMAN|PASS).*PROCESSED_[0-9]{8}", input_results_folder)) if(is_empty(input_folder_short)){ if(verbose) message("\nThe PROCESSED_YYYYMMDD folder full path is not correct. Example:") - if(verbose) message("/full/path/to/folder/PASS1A-06/T66/RPNEG/BATCH1_20190822/PROCESSED_202003") + if(verbose) message("/full/path/to/folder/PASS1A-06/T66/RPNEG/BATCH1_20190822/PROCESSED_20200302") stop("Input folder not according to guidelines") } @@ -760,7 +766,7 @@ validate_metabolomics <- function(input_results_folder, if(verbose) message("\n\n## QC Plots\n") - output_prefix <- paste0(cas, ".", tolower(phase), ".", tissue_code, ".",tolower(assay), ".", tolower(processfolder)) + output_prefix <- paste0(cas, ".", tolower(phase2check), ".", tissue_code, ".",tolower(assay), ".", tolower(processfolder)) if(f_rmn & f_msn ){ r_m_n$id_type <- "named" @@ -996,11 +1002,6 @@ validate_metabolomics <- function(input_results_folder, if( is.na(ic_vl) ){ if(f_msn){ vl_results <- m_s_n$sample_id[which(m_s_n$sample_type == "Sample")] - if( !is.null(dmaqc_phase2validate) ){ - phase2check <- dmaqc_phase2validate - }else{ - phase2check <- phase - } ic_vl <- check_viallabel_dmaqc(vl_submitted = vl_results, tissue_code = tissue_code, cas = cas, @@ -1030,7 +1031,7 @@ validate_metabolomics <- function(input_results_folder, if(verbose) message("\nTOTAL NUMBER OF ISSUES: ", total_issues,"\n") if(full_report){ reports <- data.frame(cas = cas, - phase= phase, + phase= phase2check, tissue = tissue_code, t_name = t_name, assay = assay, diff --git a/docs/404.html b/docs/404.html index fa0d047c..dca280a3 100644 --- a/docs/404.html +++ b/docs/404.html @@ -71,7 +71,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 267f1b9a..271bc94e 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -71,7 +71,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/articles/index.html b/docs/articles/index.html index eb7d751e..b0d1fb39 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -71,7 +71,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/articles/other_functions.html b/docs/articles/other_functions.html index 0e890201..b33c4160 100644 --- a/docs/articles/other_functions.html +++ b/docs/articles/other_functions.html @@ -4,7 +4,7 @@ - + MotrpacBicQC: Other Functions @@ -123,7 +123,7 @@

-

2021-08-06

+

2021-08-11

diff --git a/docs/articles/qc_metabolomics.html b/docs/articles/qc_metabolomics.html index 7acff55f..39aee96f 100644 --- a/docs/articles/qc_metabolomics.html +++ b/docs/articles/qc_metabolomics.html @@ -4,7 +4,7 @@ - + MotrpacBicQC: Metabolomics QC @@ -191,7 +191,7 @@

-

2021-08-06

+

2021-08-11

diff --git a/docs/articles/qc_proteomics.html b/docs/articles/qc_proteomics.html index 76160a5e..f41e8fc3 100644 --- a/docs/articles/qc_proteomics.html +++ b/docs/articles/qc_proteomics.html @@ -4,7 +4,7 @@ - + MotrpacBicQC: Proteomics QC @@ -191,7 +191,7 @@

-

2021-08-06

+

2021-08-11

diff --git a/docs/authors.html b/docs/authors.html index 5b7fef8a..90777fd0 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -71,7 +71,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/index.html b/docs/index.html index d9aae7a1..7a279db3 100644 --- a/docs/index.html +++ b/docs/index.html @@ -39,7 +39,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/news/index.html b/docs/news/index.html index 265ca412..cfd9328f 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -71,7 +71,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 @@ -132,6 +132,14 @@

Changelog

Source: NEWS.md +
+

+MotrpacBicQC 0.5.9 (2021-08-10)

+
    +
  • Adjustments for PASS1C-06
    • +
  • Bug fixes affecting HUMAN phase processing
    • +
+

MotrpacBicQC 0.5.8 (2021-08-06)

diff --git a/docs/notes_developers.html b/docs/notes_developers.html index 77f9c6c0..594b652d 100644 --- a/docs/notes_developers.html +++ b/docs/notes_developers.html @@ -71,7 +71,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 33ec2093..8a9750f0 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -5,5 +5,5 @@ articles: other_functions: other_functions.html qc_metabolomics: qc_metabolomics.html qc_proteomics: qc_proteomics.html -last_built: 2021-08-06T23:18Z +last_built: 2021-08-11T17:35Z diff --git a/docs/reference/assay_abbr.html b/docs/reference/assay_abbr.html index 56941dda..55c70eb0 100644 --- a/docs/reference/assay_abbr.html +++ b/docs/reference/assay_abbr.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/assay_codes.html b/docs/reference/assay_codes.html index 1b82e3f8..f5f4a993 100644 --- a/docs/reference/assay_codes.html +++ b/docs/reference/assay_codes.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/assay_order.html b/docs/reference/assay_order.html index 81cbe7eb..0f280cce 100644 --- a/docs/reference/assay_order.html +++ b/docs/reference/assay_order.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/bic_animal_tissue_code.html b/docs/reference/bic_animal_tissue_code.html index 40c5e7f3..2b50c3b7 100644 --- a/docs/reference/bic_animal_tissue_code.html +++ b/docs/reference/bic_animal_tissue_code.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_failedsamples.html b/docs/reference/check_failedsamples.html index 90e0133a..d4698ccf 100644 --- a/docs/reference/check_failedsamples.html +++ b/docs/reference/check_failedsamples.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_manifest_rawdata.html b/docs/reference/check_manifest_rawdata.html index b29251dd..fba8c903 100644 --- a/docs/reference/check_manifest_rawdata.html +++ b/docs/reference/check_manifest_rawdata.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_metadata_metabolites.html b/docs/reference/check_metadata_metabolites.html index 1dbe4afc..dbc15671 100644 --- a/docs/reference/check_metadata_metabolites.html +++ b/docs/reference/check_metadata_metabolites.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_metadata_samples.html b/docs/reference/check_metadata_samples.html index b85b90af..aafdf3b7 100644 --- a/docs/reference/check_metadata_samples.html +++ b/docs/reference/check_metadata_samples.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_ratio_proteomics.html b/docs/reference/check_ratio_proteomics.html index 5feb4ea9..3767e1e6 100644 --- a/docs/reference/check_ratio_proteomics.html +++ b/docs/reference/check_ratio_proteomics.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_results.html b/docs/reference/check_results.html index f3c3a164..c5e4e0c1 100644 --- a/docs/reference/check_results.html +++ b/docs/reference/check_results.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_rii_proteomics.html b/docs/reference/check_rii_proteomics.html index b1f96c7c..a12571b6 100644 --- a/docs/reference/check_rii_proteomics.html +++ b/docs/reference/check_rii_proteomics.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_vial_metadata_proteomics.html b/docs/reference/check_vial_metadata_proteomics.html index 380251fa..5ace2a78 100644 --- a/docs/reference/check_vial_metadata_proteomics.html +++ b/docs/reference/check_vial_metadata_proteomics.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/check_viallabel_dmaqc.html b/docs/reference/check_viallabel_dmaqc.html index 58d2bee0..790715cd 100644 --- a/docs/reference/check_viallabel_dmaqc.html +++ b/docs/reference/check_viallabel_dmaqc.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/combine_metabolomics_batch.html b/docs/reference/combine_metabolomics_batch.html index ad1062c8..a9ed3c25 100644 --- a/docs/reference/combine_metabolomics_batch.html +++ b/docs/reference/combine_metabolomics_batch.html @@ -74,7 +74,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/filter_required_columns.html b/docs/reference/filter_required_columns.html index c8590c18..06221848 100644 --- a/docs/reference/filter_required_columns.html +++ b/docs/reference/filter_required_columns.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/get_and_validate_mdd.html b/docs/reference/get_and_validate_mdd.html index 40d604d3..ebd53dbc 100644 --- a/docs/reference/get_and_validate_mdd.html +++ b/docs/reference/get_and_validate_mdd.html @@ -73,7 +73,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/group_abbr.html b/docs/reference/group_abbr.html index 9d859b6c..28ef8a09 100644 --- a/docs/reference/group_abbr.html +++ b/docs/reference/group_abbr.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/group_cols.html b/docs/reference/group_cols.html index 5ff79fc1..0b09c94d 100644 --- a/docs/reference/group_cols.html +++ b/docs/reference/group_cols.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/index.html b/docs/reference/index.html index 84ac1820..de068001 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -71,7 +71,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/load_metabolomics_batch.html b/docs/reference/load_metabolomics_batch.html index 23adcd46..271bd9d3 100644 --- a/docs/reference/load_metabolomics_batch.html +++ b/docs/reference/load_metabolomics_batch.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/load_proteomics.html b/docs/reference/load_proteomics.html index b402ed89..cb00bee7 100644 --- a/docs/reference/load_proteomics.html +++ b/docs/reference/load_proteomics.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/merge_all_metabolomics.html b/docs/reference/merge_all_metabolomics.html index b1144e16..4d2c66fe 100644 --- a/docs/reference/merge_all_metabolomics.html +++ b/docs/reference/merge_all_metabolomics.html @@ -73,7 +73,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/merge_metabolomics_metadata.html b/docs/reference/merge_metabolomics_metadata.html index 0cb7563e..dfc0b66d 100644 --- a/docs/reference/merge_metabolomics_metadata.html +++ b/docs/reference/merge_metabolomics_metadata.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/merge_phenotype_metabolomics.html b/docs/reference/merge_phenotype_metabolomics.html index 7086d2a5..36841abe 100644 --- a/docs/reference/merge_phenotype_metabolomics.html +++ b/docs/reference/merge_phenotype_metabolomics.html @@ -73,7 +73,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/metabolomics_data_dictionary.html b/docs/reference/metabolomics_data_dictionary.html index 35ad39f2..7f1d8782 100644 --- a/docs/reference/metabolomics_data_dictionary.html +++ b/docs/reference/metabolomics_data_dictionary.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/metadata_metabolites_named.html b/docs/reference/metadata_metabolites_named.html index 4daee6ad..74796d5d 100644 --- a/docs/reference/metadata_metabolites_named.html +++ b/docs/reference/metadata_metabolites_named.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/metadata_metabolites_unnamed.html b/docs/reference/metadata_metabolites_unnamed.html index 6e09a242..d8de8f69 100644 --- a/docs/reference/metadata_metabolites_unnamed.html +++ b/docs/reference/metadata_metabolites_unnamed.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/metadata_sample_named.html b/docs/reference/metadata_sample_named.html index 7f4bc329..9433fdb7 100644 --- a/docs/reference/metadata_sample_named.html +++ b/docs/reference/metadata_sample_named.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/metadata_sample_unnamed.html b/docs/reference/metadata_sample_unnamed.html index a70e4912..1332b55d 100644 --- a/docs/reference/metadata_sample_unnamed.html +++ b/docs/reference/metadata_sample_unnamed.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/open_file.html b/docs/reference/open_file.html index 7dba0c5d..b3289970 100644 --- a/docs/reference/open_file.html +++ b/docs/reference/open_file.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/phenotypes_pass1a06_short.html b/docs/reference/phenotypes_pass1a06_short.html index 37ae2751..41bc48c5 100644 --- a/docs/reference/phenotypes_pass1a06_short.html +++ b/docs/reference/phenotypes_pass1a06_short.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/plot_basic_metabolomics_qc.html b/docs/reference/plot_basic_metabolomics_qc.html index 777d565e..ce3e36a4 100644 --- a/docs/reference/plot_basic_metabolomics_qc.html +++ b/docs/reference/plot_basic_metabolomics_qc.html @@ -73,7 +73,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/remove_empty_columns.html b/docs/reference/remove_empty_columns.html index a08ec343..d6fe78ad 100644 --- a/docs/reference/remove_empty_columns.html +++ b/docs/reference/remove_empty_columns.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/remove_empty_rows.html b/docs/reference/remove_empty_rows.html index 96681fa6..1d6be2cd 100644 --- a/docs/reference/remove_empty_rows.html +++ b/docs/reference/remove_empty_rows.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/results_named.html b/docs/reference/results_named.html index 4dbda3c0..53f985a3 100644 --- a/docs/reference/results_named.html +++ b/docs/reference/results_named.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/results_unnamed.html b/docs/reference/results_unnamed.html index 57670cf1..4db2e20b 100644 --- a/docs/reference/results_unnamed.html +++ b/docs/reference/results_unnamed.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/sex_abbr.html b/docs/reference/sex_abbr.html index 15cb5eb4..bc3c1a12 100644 --- a/docs/reference/sex_abbr.html +++ b/docs/reference/sex_abbr.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/sex_cols.html b/docs/reference/sex_cols.html index dee6b2b5..a47e841d 100644 --- a/docs/reference/sex_cols.html +++ b/docs/reference/sex_cols.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/tissue_abbr.html b/docs/reference/tissue_abbr.html index ca9cc81f..122fbd03 100644 --- a/docs/reference/tissue_abbr.html +++ b/docs/reference/tissue_abbr.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/tissue_cols.html b/docs/reference/tissue_cols.html index b72746de..5d5b9db0 100644 --- a/docs/reference/tissue_cols.html +++ b/docs/reference/tissue_cols.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/tissue_order.html b/docs/reference/tissue_order.html index 48a99b69..5d993a8d 100644 --- a/docs/reference/tissue_order.html +++ b/docs/reference/tissue_order.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_assay.html b/docs/reference/validate_assay.html index 44e88fd1..3a8ad2f0 100644 --- a/docs/reference/validate_assay.html +++ b/docs/reference/validate_assay.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_batch.html b/docs/reference/validate_batch.html index 2b1ffc1b..5747c661 100644 --- a/docs/reference/validate_batch.html +++ b/docs/reference/validate_batch.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_cas.html b/docs/reference/validate_cas.html index f3241204..1267ec60 100644 --- a/docs/reference/validate_cas.html +++ b/docs/reference/validate_cas.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_metabolomics.html b/docs/reference/validate_metabolomics.html index e1c0b673..12df0d84 100644 --- a/docs/reference/validate_metabolomics.html +++ b/docs/reference/validate_metabolomics.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_phase.html b/docs/reference/validate_phase.html index 23b96536..94466a98 100644 --- a/docs/reference/validate_phase.html +++ b/docs/reference/validate_phase.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_processFolder.html b/docs/reference/validate_processFolder.html index fbd5ca4c..10d8d3ee 100644 --- a/docs/reference/validate_processFolder.html +++ b/docs/reference/validate_processFolder.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_proteomics.html b/docs/reference/validate_proteomics.html index f82abd6d..cbcaa2bc 100644 --- a/docs/reference/validate_proteomics.html +++ b/docs/reference/validate_proteomics.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/validate_tissue.html b/docs/reference/validate_tissue.html index 2ecfeed2..e35fca9d 100644 --- a/docs/reference/validate_tissue.html +++ b/docs/reference/validate_tissue.html @@ -72,7 +72,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/write_metabolomics_releases.html b/docs/reference/write_metabolomics_releases.html index c3653105..ed619eaa 100644 --- a/docs/reference/write_metabolomics_releases.html +++ b/docs/reference/write_metabolomics_releases.html @@ -73,7 +73,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9 diff --git a/docs/reference/write_proteomics_releases.html b/docs/reference/write_proteomics_releases.html index d6f8d306..a5ab9b09 100644 --- a/docs/reference/write_proteomics_releases.html +++ b/docs/reference/write_proteomics_releases.html @@ -73,7 +73,7 @@ MotrpacBicQC - 0.5.8 + 0.5.9