- Replace all instances of
t65-aorta
witht99-vena-cava
, andAorta
withVena Cava
.
- Update
MotrpacRatTraining6mo
version requirement.
- Create a new tag to associate with Zenodo.
- Add
PROT_FEATURE_ANNOT
,PHOPSHO_FEATURE_ANNOT
,UBIQ_FEATURE_ANNOT
,ACETYL_FEATURE_ANNOT
,TRNSCRPT_FEATURE_ANNOT
. - Add
graphical_cluster
column toGRAPH_PW_ENRICH
. - In
TRAINING_REGULATED_FEATURES
only, calculate missingtimewise_logFC_se
for METHYL features:timewise_logFC_se = timewise_logFC/timewise_zscore
- Change URLs for
ATAC_FEATURE_ANNOT
andMETHYL_FEATURE_ANNOT
. - Update
@source
entries.
- Update phenotypic data (
PHENO
) to v3, which includes changes to the VO2max data as announced by the BIC. Retain old column names for backwards compatibility. - Copy all
training-dea
tables to GCP and add documentation (TRAINING_DA
). - Add details of metabolomics meta-regression to
METAB_DA_METAREG
.
- Fix shuffled PIDs in
METAB_NORM_DATA_FLAT
andIMMUNO_NORM_DATA_FLAT
introduced by not reordering the list returned byMotrpacRatTraining6mo::viallabel_to_pid()
.METAB_NORM_DATA_NESTED
andIMMUNO_NORM_DATA_NESTED
are unchanged. - Regenerate
TRAINING_REGULATED_NORM_DATA
andTRAINING_REGULATED_NORM_DATA_NO_OUTLIERS
to account for changes above.
- Add
TRAINING_REGULATED_NORM_DATA
andTRAINING_REGULATED_NORM_DATA_NO_OUTLIERS
- Fix missing
feature
labels inMETAB_NORM_DATA_FLAT
- Add
RAT_TO_HUMAN_PHOSPHO
- Add
FEATURE_TO_GENE_FILT
for faster indexing
First version with vignette. Additional minor improvements to documentation.