From fef242c811ccde1445564c4035bf83510ac1b050 Mon Sep 17 00:00:00 2001
From: sayalaruano <sebasar1245@gmail.com>
Date: Wed, 13 Aug 2025 15:53:44 +0200
Subject: [PATCH 1/4] =?UTF-8?q?=F0=9F=93=9D=20Docs:=20Replace=20svg=20by?=
 =?UTF-8?q?=20png=20logo=20on=20README?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index e27464a..34590a0 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-# ![ABaCo Logg](https://raw.githubusercontent.com/Multiomics-Analytics-Group/abaco/HEAD/docs/images/logo/abaco_logo.svg)
+# ![ABaCo Logg](https://raw.githubusercontent.com/Multiomics-Analytics-Group/abaco/HEAD/docs/images/logo/abaco_logo.png)
 
 <p align="center"><em>Batch Effect Correction framework for metagenomic data</em></p>
 

From a0dc623e3c7e72d5685c2f9c460162b664693ab0 Mon Sep 17 00:00:00 2001
From: sayalaruano <sebasar1245@gmail.com>
Date: Wed, 13 Aug 2025 16:01:52 +0200
Subject: [PATCH 2/4] =?UTF-8?q?=F0=9F=93=9D=20Update=20index=20docs=20and?=
 =?UTF-8?q?=20README=20to=20see=20the=20png=20version=20of=20the=20logo?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 README.md     | 2 +-
 docs/index.md | 4 +++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 34590a0..9981bca 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-# ![ABaCo Logg](https://raw.githubusercontent.com/Multiomics-Analytics-Group/abaco/HEAD/docs/images/logo/abaco_logo.png)
+![ABaCo Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/abaco/HEAD/docs/images/logo/abaco_logo.png)
 
 <p align="center"><em>Batch Effect Correction framework for metagenomic data</em></p>
 
diff --git a/docs/index.md b/docs/index.md
index 7721214..82448b7 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -1,6 +1,8 @@
-# ABaCo Overview
+<!-- https://myst-parser.readthedocs.io/en/latest/faq/index.html
+#include-a-file-from-outside-the-docs-folder-like-readme-md -->
 
 ```{include} ../README.md
+:caption: Overview
 :start-line: 1
 :relative-docs: docs
 :relative-images:

From 3a544df721ea4064c839b4765a85ad8e6a505c0c Mon Sep 17 00:00:00 2001
From: sayalaruano <sebasar1245@gmail.com>
Date: Wed, 13 Aug 2025 16:15:55 +0200
Subject: [PATCH 3/4] =?UTF-8?q?=F0=9F=93=9D=20Docs:=20Add=20##=20to=20make?=
 =?UTF-8?q?=20logo=20appear=20on=20docs?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 9981bca..0a00dc7 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-![ABaCo Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/abaco/HEAD/docs/images/logo/abaco_logo.png)
+## ![ABaCo Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/abaco/HEAD/docs/images/logo/abaco_logo.png)
 
 <p align="center"><em>Batch Effect Correction framework for metagenomic data</em></p>
 

From 68131019a1ecc83691afb12ca0b5445662494c8f Mon Sep 17 00:00:00 2001
From: sayalaruano <sebasar1245@gmail.com>
Date: Wed, 13 Aug 2025 16:33:23 +0200
Subject: [PATCH 4/4] =?UTF-8?q?=F0=9F=93=9D=20Docs:=20make=20the=20logo=20?=
 =?UTF-8?q?appear=20on=20docs?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

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 docs/index.md | 1 -
 1 file changed, 1 deletion(-)

diff --git a/docs/index.md b/docs/index.md
index 82448b7..bd87695 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -3,7 +3,6 @@
 
 ```{include} ../README.md
 :caption: Overview
-:start-line: 1
 :relative-docs: docs
 :relative-images:
 ```