bgcflow wrapper failed to read the resource config file on python 3.12

[matinnuhamunada]

It seems the latest python release cause error when reading the config resources, pinning the python to 3.11 fix the issue

DEBUG    05/10 10:32:05   Starting new HTTP connection (1): 127.0.0.1:5000
Running Panoptes to monitor BGCFlow jobs at http://127.0.0.1:5000/
Panoptes job id: 2456
Connecting to Panoptes...
DEBUG    05/10 10:32:05   Starting new HTTP connection (1): 127.0.0.1:5000
Retrying to connect: 1x
 * Serving Flask app 'panoptes.app'
 * Debug mode: off
DEBUG    05/10 10:32:06   Starting new HTTP connection (1): 127.0.0.1:5000
DEBUG    05/10 10:32:06   http://127.0.0.1:5000/ "GET /api/service-info HTTP/1.1" 200 21
Panoptes status: running
cd . && snakemake --snakefile workflow/Snakefile --use-conda --keep-going --rerun-incomplete --rerun-triggers mtime -c 8 --dryrun    --wms-monitor http://127.0.0.1:5000/
This is BGCflow version  0.7.6 .
  Checking dependencies...
 Found configuration setting to use antiSMASH  7
 antismash  from:  workflow/envs/antismash.yaml
  -  antismash  will be installed from  git+https://github.com/antismash/antismash.git
  -  antismash == 7.0.0
 bigslice  from:  workflow/envs/bigslice.yaml
  -  bigslice  will be installed from  git+https://github.com/medema-group/bigslice.git
  -  bigslice == 103d8f2
 cblaster  from:  workflow/envs/cblaster.yaml
  -  cblaster  will be installed using pip
  -  cblaster == 1.3.12
 prokka  from:  workflow/envs/prokka.yaml
  -  prokka == 1.14.6
 eggnog-mapper  from:  workflow/envs/eggnog.yaml
  -  eggnog-mapper == 2.1.6
 roary  from:  workflow/envs/roary.yaml
  -  roary == 3.13.0
 seqfu  from:  workflow/envs/seqfu.yaml
  -  seqfu == 1.15.3
 checkm  from:  workflow/envs/checkm.yaml
  -  checkm == 1.1.3
 gtdbtk  from:  workflow/envs/gtdbtk.yaml
  -  gtdbtk == 2.3.0
 Step 1. Extracting project information from config...
 Step 2. 1  Getting sample information from:  config/Lactobacillus_delbrueckii/project_config.yaml
  - Processing project [ Lactobacillus_delbrueckii ]
  - Custom input directory:  False
  - Getting input files from:  /home/saedwi/bgcflow_test/data/raw/fasta
  - Custom input format:  False
  - Default input file type:  fna
 Step 3 Merging genome_ids across projects...
 Step 4. Checking for user-defined local resources...
 FileNotFoundError in file /home/saedwi/bgcflow_test/workflow/rules/common.smk, line 848:
 Error: User-defined resource  antismash_db  at  resources/antismash_db  does not exist.
Check the config.yaml and provide the right path for resource  antismash_db  or
change it to the default path: resources/ antismash_db
  File "/home/saedwi/bgcflow_test/workflow/Snakefile", line 47, in <module>
  File "/home/saedwi/bgcflow_test/workflow/rules/common.smk", line 848, in custom_resource_dir
Killing panoptes: PID 2456