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environment.yml
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environment.yml
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name: sv_env
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _r-mutex=1.0.0=anacondar_1
- appnope=0.1.0=py36_1000
- attrs=19.1.0=py_0
- backcall=0.1.0=py_0
- bcftools=1.9=h3a161e8_3
- bedtools=2.28.0=h7fd0a75_0
- blast=2.7.1=boost1.64_3
- bleach=3.1.0=py_0
- boost=1.64.0=py36_4
- boost-cpp=1.64.0=1
- bwidget=1.9.11=1
- bzip2=1.0.6=h1de35cc_1002
- ca-certificates=2019.3.9=hecc5488_0
- cairo=1.16.0=h9247486_1000
- cctools=895=h7512d6f_0
- certifi=2019.3.9=py36_0
- clang=4.0.1=h662ec87_0
- clang_osx-64=4.0.1=h1ce6c1d_16
- clangxx=4.0.1=hc9b4283_0
- clangxx_osx-64=4.0.1=h22b1bf0_16
- compiler-rt=4.0.1=h5487866_0
- curl=7.64.1=h22ea746_0
- decorator=4.4.0=py_0
- defusedxml=0.5.0=py_1
- entrypoints=0.3=py36_1000
- fontconfig=2.13.1=h1027ab8_1000
- freetype=2.10.0=h24853df_0
- gettext=0.19.8.1=h46ab8bc_1002
- gfortran_osx-64=4.8.5=h22b1bf0_8
- glib=2.58.3=h2836805_1001
- gmp=6.1.2=h0a44026_1000
- gnutls=3.5.19=h2a4e5f8_1
- graphite2=1.3.13=h2098e52_1000
- gsl=2.4=ha2d443c_1006
- harfbuzz=2.4.0=h92b87b8_0
- htslib=1.9=h3a161e8_7
- icu=58.2=h0a44026_1000
- ipykernel=5.1.0=py36h24bf2e0_1002
- ipython=7.5.0=py36h24bf2e0_0
- ipython_genutils=0.2.0=py_1
- jedi=0.13.3=py36_0
- jinja2=2.10.1=py_0
- jpeg=9c=h1de35cc_1001
- jsonschema=3.0.1=py36_0
- jupyter_client=5.2.4=py_3
- jupyter_core=4.4.0=py_0
- krb5=1.16.3=hcfa6398_1001
- ld64=274.2=h7c2db76_0
- libblas=3.8.0=8_openblas
- libcblas=3.8.0=8_openblas
- libcurl=7.64.1=h16faf7d_0
- libcxx=4.0.1=h579ed51_0
- libcxxabi=4.0.1=hebd6815_0
- libdeflate=1.0=h1de35cc_1
- libedit=3.1.20170329=hcfe32e1_1001
- libffi=3.2.1=h6de7cb9_1006
- libgfortran=3.0.1=0
- libiconv=1.15=h01d97ff_1005
- liblapack=3.8.0=8_openblas
- libpng=1.6.37=h2573ce8_0
- libsodium=1.0.16=h1de35cc_1001
- libssh2=1.8.2=hcdc9a53_2
- libtiff=4.0.10=h79f4b77_1001
- libxcb=1.13=h1de35cc_1002
- libxml2=2.9.9=hd80cff7_0
- llvm=4.0.1=hc748206_0
- llvm-lto-tapi=4.0.1=h6701bc3_0
- llvm-openmp=8.0.0=h770b8ee_0
- make=4.2.1=h1de35cc_2004
- markupsafe=1.1.1=py36h1de35cc_0
- mistune=0.8.4=py36h1de35cc_1000
- nbconvert=5.5.0=py_0
- nbformat=4.4.0=py_1
- ncurses=6.1=h0a44026_1002
- nettle=3.3=0
- notebook=5.7.8=py36_0
- numpy=1.16.3=py36hdf140aa_0
- openblas=0.3.6=hd44dcd8_1
- openssl=1.1.1b=h01d97ff_2
- pandas=0.24.2=py36h0a44026_0
- pandoc=2.7.2=0
- pandocfilters=1.4.2=py_1
- pango=1.40.14=h315e1c8_1004
- parso=0.4.0=py_0
- pcre=8.41=h0a44026_1003
- perl=5.22.0.1=0
- perl-archive-tar=2.18=1
- perl-list-moreutils=0.15=pl5.22.0_0
- pexpect=4.7.0=py36_0
- pickleshare=0.7.5=py36_1000
- pip=19.1=py36_0
- pixman=0.34.0=h1de35cc_1003
- prometheus_client=0.6.0=py_0
- prompt_toolkit=2.0.9=py_0
- pthread-stubs=0.4=h1de35cc_1001
- ptyprocess=0.6.0=py_1001
- pybedtools=0.8.0=py36h5c9b4e4_1
- pygments=2.3.1=py_0
- pyrsistent=0.15.1=py36h01d97ff_0
- pysam=0.15.2=py36h1719d13_3
- python=3.6.7=h8dc6b48_1004
- python-dateutil=2.8.0=py_0
- pytz=2019.1=py_0
- pyvcf=0.6.8=py36_1000
- pyzmq=18.0.1=py36h2d07e9b_1
- r-askpass=1.1=r351h46e59ec_0
- r-assertthat=0.2.1=r351h6115d3f_0
- r-backports=1.1.4=r351h159158b_0
- r-base=3.5.1=h3f7eb4a_1006
- r-base64enc=0.1_3=r351h46e59ec_1002
- r-bedr=1.0.4=r351h6115d3f_1
- r-bh=1.69.0_1=r351h6115d3f_0
- r-boot=1.3_22=r351_0
- r-broom=0.5.2=r351h6115d3f_0
- r-callr=3.2.0=r351h6115d3f_0
- r-caret=6.0_82=r351h159158b_0
- r-cellranger=1.1.0=r351h6115d3f_1001
- r-class=7.3_15=r351h46e59ec_1000
- r-cli=1.1.0=r351h6115d3f_0
- r-clipr=0.6.0=r351h6115d3f_0
- r-cluster=2.0.8=r351haf69682_0
- r-codetools=0.2_16=r351h6115d3f_1000
- r-colorspace=1.4_1=r351h159158b_0
- r-crayon=1.3.4=r351h6115d3f_1001
- r-curl=3.3=r351h46e59ec_0
- r-data.table=1.12.2=r351h159158b_0
- r-dbi=1.0.0=r351h6115d3f_1001
- r-dbplyr=1.4.0=r351h6115d3f_0
- r-digest=0.6.18=r351h46e59ec_1000
- r-dplyr=0.8.0.1=r351h466af19_1000
- r-ellipsis=0.1.0=r351h46e59ec_0
- r-essentials=3.5.1=r351_2000
- r-evaluate=0.13=r351h6115d3f_1
- r-fansi=0.4.0=r351h46e59ec_1000
- r-forcats=0.4.0=r351h6115d3f_0
- r-foreach=1.4.4=r351h6115d3f_1001
- r-foreign=0.8_71=r351h46e59ec_1002
- r-formatr=1.6=r351h6115d3f_0
- r-fs=1.2.7=r351hf99fc2c_0
- r-futile.logger=1.4.3=r351h6115d3f_1001
- r-futile.options=1.0.1=r351h6115d3f_1000
- r-generics=0.0.2=r351h6115d3f_1001
- r-ggplot2=3.1.1=r351h6115d3f_0
- r-gistr=0.4.2=r351h6115d3f_1001
- r-glmnet=2.0_16=r351hfffe0aa_1001
- r-glue=1.3.1=r351h159158b_0
- r-gower=0.2.0=r351h46e59ec_0
- r-gtable=0.3.0=r351h6115d3f_0
- r-haven=2.1.0=r351h466af19_0
- r-hexbin=1.27.2=r351hfffe0aa_1002
- r-highr=0.8=r351h6115d3f_0
- r-hms=0.4.2=r351h6115d3f_1000
- r-htmltools=0.3.6=r351h0a44026_1002
- r-htmlwidgets=1.3=r351h6115d3f_1000
- r-httpuv=1.5.1=r351hf99fc2c_0
- r-httr=1.4.0=r351h6115d3f_1000
- r-ipred=0.9_8=r351h46e59ec_1000
- r-irdisplay=0.7=r351_1000
- r-irkernel=1.0.0=r351h6115d3f_0
- r-iterators=1.0.10=r351h6115d3f_1001
- r-jsonlite=1.6=r351h46e59ec_1000
- r-kernsmooth=2.23_15=r351hfffe0aa_1002
- r-knitr=1.22=r351h6115d3f_0
- r-labeling=0.3=r351h6115d3f_1001
- r-lambda.r=1.2.3=r351h6115d3f_1000
- r-later=0.8.0=r351h466af19_0
- r-lattice=0.20_38=r351h46e59ec_1000
- r-lava=1.6.5=r351h6115d3f_0
- r-lazyeval=0.2.2=r351h159158b_0
- r-lubridate=1.7.4=r351h466af19_1001
- r-magrittr=1.5=r351h6115d3f_1001
- r-maps=3.3.0=r351h46e59ec_1002
- r-markdown=0.9=r351h46e59ec_1000
- r-mass=7.3_51.4=r351h159158b_0
- r-matrix=1.2_17=r351h159158b_0
- r-mgcv=1.8_28=r351h159158b_0
- r-mime=0.6=r351h46e59ec_1000
- r-modelmetrics=1.2.2=r351hf99fc2c_0
- r-modelr=0.1.4=r351h6115d3f_0
- r-munsell=0.5.0=r351h6115d3f_1001
- r-nlme=3.1_139=r351haf69682_0
- r-nnet=7.3_12=r351h46e59ec_1002
- r-numderiv=2016.8_1=r351h6115d3f_1001
- r-openssl=1.3=r351hdb18a49_0
- r-pbdzmq=0.3_3=r351h583b4ea_1001
- r-pillar=1.3.1=r351h6115d3f_1000
- r-pkgconfig=2.0.2=r351h6115d3f_1001
- r-plogr=0.2.0=r351h6115d3f_1001
- r-plyr=1.8.4=r351h466af19_1002
- r-praise=1.0.0=r351h6115d3f_1001
- r-prettyunits=1.0.2=r351h6115d3f_1001
- r-processx=3.3.0=r351h159158b_0
- r-prodlim=2018.04.18=r351h466af19_1002
- r-progress=1.2.0=r351h6115d3f_1002
- r-promises=1.0.1=r351h466af19_1000
- r-pryr=0.1.4=r351h466af19_1002
- r-ps=1.3.0=r351h46e59ec_1000
- r-purrr=0.3.2=r351h159158b_0
- r-quantmod=0.4_13=r351h6115d3f_1000
- r-r.methodss3=1.7.1=r351h6115d3f_1001
- r-r.oo=1.22.0=r351h6115d3f_1000
- r-r.utils=2.8.0=r351h6115d3f_0
- r-r6=2.4.0=r351h6115d3f_0
- r-randomforest=4.6_14=r351hfffe0aa_1000
- r-rbokeh=0.5.0=r351h6115d3f_1001
- r-rcolorbrewer=1.1_2=r351h6115d3f_1001
- r-rcpp=1.0.1=r351hf99fc2c_0
- r-rcpproll=0.3.0=r351h466af19_1000
- r-readr=1.3.1=r351h466af19_1000
- r-readxl=1.3.1=r351hf99fc2c_0
- r-recipes=0.1.5=r351h6115d3f_0
- r-recommended=3.5.1=r351_1001
- r-rematch=1.0.1=r351h6115d3f_1001
- r-repr=0.19.2=r351h6115d3f_0
- r-reprex=0.2.1=r351h6115d3f_1000
- r-reshape2=1.4.3=r351h466af19_1003
- r-rlang=0.3.4=r351h159158b_0
- r-rmarkdown=1.12=r351h6115d3f_0
- r-rpart=4.1_15=r351h159158b_0
- r-rstudioapi=0.10=r351h6115d3f_0
- r-rvest=0.3.3=r351h6115d3f_0
- r-scales=1.0.0=r351h466af19_1001
- r-selectr=0.4_1=r351h6115d3f_1000
- r-shiny=1.3.2=r351h6115d3f_0
- r-sourcetools=0.1.7=r351h0a44026_1000
- r-spatial=7.3_11=r351h46e59ec_1002
- r-squarem=2017.10_1=r351h6115d3f_1001
- r-stringi=1.4.3=r351hf99fc2c_0
- r-stringr=1.4.0=r351h6115d3f_0
- r-survival=2.44_1.1=r351h159158b_0
- r-sys=3.2=r351h159158b_0
- r-testthat=2.1.1=r351hf99fc2c_0
- r-tibble=2.1.1=r351h159158b_0
- r-tidyr=0.8.3=r351hf99fc2c_0
- r-tidyselect=0.2.5=r351h466af19_1000
- r-tidyverse=1.2.1=r351h6115d3f_1001
- r-timedate=3043.102=r351h6115d3f_1000
- r-tinytex=0.12=r351h6115d3f_0
- r-ttr=0.23_4=r351hfffe0aa_1000
- r-utf8=1.1.4=r351h46e59ec_1000
- r-uuid=0.1_2=r351h46e59ec_1001
- r-venndiagram=1.6.20=r351h6115d3f_1000
- r-viridislite=0.3.0=r351h6115d3f_1001
- r-whisker=0.3_2=r351h6115d3f_1001
- r-withr=2.1.2=r351h6115d3f_1000
- r-xfun=0.6=r351h6115d3f_0
- r-xml2=1.2.0=r351h466af19_1002
- r-xtable=1.8_3=r351_2000
- r-xts=0.11_1=r351h46e59ec_1000
- r-yaml=2.2.0=r351h46e59ec_1001
- r-zoo=1.8_5=r351h159158b_0
- readline=7.0=hcfe32e1_1001
- samtools=1.9=h7c4ea83_11
- send2trash=1.5.0=py_0
- setuptools=41.0.1=py36_0
- six=1.12.0=py36_1000
- sqlite=3.26.0=h1765d9f_1001
- terminado=0.8.2=py36_0
- testpath=0.4.2=py_1001
- tk=8.6.9=ha441bb4_1001
- tktable=2.10=h1de35cc_0
- tornado=6.0.2=py36h01d97ff_0
- traitlets=4.3.2=py36_1000
- wcwidth=0.1.7=py_1
- webencodings=0.5.1=py_1
- wheel=0.33.1=py36_0
- xorg-kbproto=1.0.7=h1de35cc_1002
- xorg-libice=1.0.9=h01d97ff_1004
- xorg-libsm=1.2.3=h01d97ff_1000
- xorg-libx11=1.6.7=h1de35cc_1000
- xorg-libxau=1.0.9=h1de35cc_0
- xorg-libxdmcp=1.1.3=h01d97ff_0
- xorg-libxext=1.3.4=h01d97ff_0
- xorg-libxrender=0.9.10=h01d97ff_1002
- xorg-renderproto=0.11.1=h1de35cc_1002
- xorg-xextproto=7.3.0=h1de35cc_1002
- xorg-xproto=7.0.31=h1de35cc_1007
- xz=5.2.4=h1de35cc_1001
- zeromq=4.3.1=h0a44026_1000
- zlib=1.2.11=h1de35cc_1004
prefix: /Users/rtorene9887/miniconda3/envs/sv_env