diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index d555c09..c06d8c0 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.3.0
+current_version = 0.3.1
 
 [bumpversion:file:setup.py]
 
diff --git a/conda/meta.yaml b/conda/meta.yaml
index a27156d..27ff977 100644
--- a/conda/meta.yaml
+++ b/conda/meta.yaml
@@ -1,6 +1,6 @@
 package:
   name: imfusion
-  version: 0.3.0
+  version: 0.3.1
 
 build:
   number: 0
diff --git a/setup.py b/setup.py
index 646b17e..cefc7ae 100644
--- a/setup.py
+++ b/setup.py
@@ -27,7 +27,7 @@
 
 setuptools.setup(
     name='imfusion',
-    version='0.3.0',
+    version='0.3.1',
     description=('Tool for identifying transposon insertions in '
                  'Insertional Mutagenesis screens from gene-transposon '
                  'fusions using single- and paired-end RNA-sequencing data.'),
diff --git a/src/imfusion/__init__.py b/src/imfusion/__init__.py
index 0194eca..fc8c8ee 100644
--- a/src/imfusion/__init__.py
+++ b/src/imfusion/__init__.py
@@ -2,4 +2,4 @@
 
 __author__ = 'Julian de Ruiter'
 __email__ = 'julianderuiter@gmail.com'
-__version__ = '0.3.0'
+__version__ = '0.3.1'