main.tex

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%%% LaPreprint: PREPRINT TEMPLATE
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% Here I could talk about what one should do in this document.
% Instead I'll refer you to the explore on your own and check the Github Repo. :-)
% Line spacing is 1.2 by default (can't be smaller).

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%%% PREAMBLE
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% Declare document class
\documentclass[9pt,biorxiv,lineno]{lapreprint}
% Choose between "biorxiv", "medrxiv", "arxiv" and "chemrxiv". Otherwise defaults "Preprint".
% Choose between "blue" and "red" colour scheme. Defaults to "blue".
% Use the "onehalfspacing" option for 1.5 line spacing.
% Use the "doublespacing" option for 2.0 line spacing.
% Use the "lineno" option for line numbers.
% Use the "endfloat" option to place floats after the bibliography.
% Use the "secnum" option to have include numbers.

% Import packages
% \usepackage{lipsum}     % Required to insert dummy text
\usepackage[version=4]{mhchem} % For chemical notation
\usepackage{siunitx}    % For SI units
\usepackage{pdflscape}  % For putting pages in landscape mode
\usepackage{rotating}   % For rotating specific elements
\usepackage{textgreek}  % Greek symbols
\usepackage{gensymb}    % Symbols
\usepackage[misc]{ifsym} % For the \Letter symbol
\usepackage{orcidlink}  % For the \orcidlink
\usepackage{listings}   % For inserting code chunks
\usepackage{colortbl}   % For Knitr table colouring
\usepackage{tabularx}   % For making Knitr tables compatible
\usepackage{longtable}  % For multi-page tables
\usepackage{subcaption}
\usepackage{multirow}
\usepackage{snotez}     % For sidenote environments. enotez for endnotes
\usepackage{csquotes}   % For language-based quote rules (helps BiBLaTeX)
\usepackage{annotate-equations}

% Make declarations
\DeclareSIUnit\Molar{M}

% Please note that these options may affect formatting. 

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%%% BIBLIOGRAPHY
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\usepackage[			% use biblatex for bibliography
	backend=biber,      % use biber or bibtex backend
    style=authoryear,   % choose style
	natbib=true,		% allow natbib commands
	hyperref=true,	    % activate hyperref support
	alldates=year,      % only show year (not month)
    uniquename=false,   % don't add firstnames when citing multiple sources by the same author
    maxbibnames=99,     % maximum number of author names to list in bibliography before 'et al' is used instead
]{biblatex}

% Just avoiding some rogue fields that cause issues with certain styles 
\AtEveryBibitem{
    \clearfield{urlyear}
    \clearfield{urlmonth}
    \clearlist{language}
}

% Update to your bibliography file
\addbibresource{src/bibliography.bib}

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%%% ARTICLE SETUP
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% Paper title
\title{LaPreprint: \\ A Preprint Template for \LaTeX}

% Authors - you can use \orcidlink{} and \authfn{} - see contribution note
\author[ \orcidlink{0000-0002-9998-0058} 1 \Letter]{Mikkel Roald-Arb\o l}
\author[2]{Co-author}

% Affiliations
\affil[1]{School of Life Sciences, University of Sussex}
\affil[2]{University of Somewhere}

% Other metadata. Feel free to add your own
\metadata[]{\Letter\hspace{.5ex} For correspondence}{\url{https://github.com/roaldarbol/LaPreprint/issues} (MRA)}
\metadata[\authfn{1}\authfn{2}\authfn{3}]{}{Here's a few symbols to denote contribution specifics, e.g. authors who contributed equally to the work.}
\metadata[]{Present address}{Evolution, Behaviour and Environment, School of Life Sciences, University of Sussex, Biology Road, Brighton, BN1 9RH, United Kingdom}
\metadata[]{Data availability}{Data availability statement. Preprocessed data could be available e.g. on \href{https://zenodo.org/}{Zenodo}.}
\metadata[]{Funding}{MRA was supported by funding from the Leverhulme Foundation. The funders had no role in the template design or decision to publish.}
\metadata[]{Competing interests}{The author declare no competing interests.}


% Surname of the lead author(s) for the running footer
\leadauthor{Roald-Arb\o l}
\shorttitle{A Preprint Template for \LaTeX}

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%%% ARTICLE START
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\begin{document}
\maketitle
\input{src/chapters/abstract}
\input{src/chapters/introduction}
\input{src/chapters/methods}
\input{src/chapters/results}
\input{src/chapters/discussion}
\input{src/chapters/formal}
\printbibliography

% DON'T EDIT. If "endfloat" option is enabled all floats appear before appendices
\if@endfloat\clearpage\processdelayedfloats\clearpage\fi 


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%%% SUPPLEMENTARY MATERIAL / APPENDICES
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%% Sadly, we can't use floats in the appendix boxes. So they don't "float", but use \captionof{figure}{...} and \captionof{table}{...} to get them properly caption.
\begin{appendix}

\begin{appendixbox}\label{app:ttt}
    \input{src/supplementary/appendices.tex}
\end{appendixbox}

\begin{appendixbox}
    \input{src/supplementary/resources.tex}
\end{appendixbox}

\end{appendix}


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%%% ARTICLE END
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\end{document}