CI updates (#133)

* update developer.yml

* update Intel.yml

* update Linux.yml

* update MacOS.yml

* update Spack.yml

* fix Linux.yml

* fix Intel.yml

Author: AlexanderRichert-NOAA

.github/workflows/Intel.yml

@@ -12,49 +12,28 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
-# Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh
-# without having to do it in manually every step
-defaults:
-  run:
-    shell: bash -leo pipefail {0}
-
 jobs:
   Intel:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        compilers: ["CC=icc FC=ifort", "CC=icx FC=ifx"]
+        compilers: ["oneapi", "classic"]
 
     steps:
 
-    # See https://software.intel.com/content/www/us/en/develop/articles/oneapi-repo-instructions.html
-    - name: install-intel
-      run: |
-        cd /tmp
-        wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
-        sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
-        rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
-        echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
-        sudo apt-get update
-        sudo apt-get install intel-oneapi-openmp intel-oneapi-compiler-fortran-2023.2.1 intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.2.1
-        echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile
+    - name: "Install Intel"
+      uses: NOAA-EMC/ci-install-intel-toolkit@develop
+      with:
+        compiler-setup: ${{ matrix.compilers }}
 
     - name: checkout
       uses: actions/checkout@v4
-      with: 
-        path: g2tmpl
-        submodules: true
 
     - name: build
       run: |
-        cd g2tmpl
-        mkdir build 
-        cd build
-        ${{ matrix.compilers }} cmake ..
-        make -j2 VERBOSE=1
+        cmake -B build
+        cmake --build build --parallel 2 --verbose
     
     - name: test
       run: |
-        cd $GITHUB_WORKSPACE/g2tmpl/build
-        ctest --verbose --output-on-failure --rerun-failed 
-
+        ctest --test-dir build --verbose --output-on-failure --rerun-failed 

.github/workflows/Linux.yml

@@ -31,26 +31,19 @@ jobs:
     steps:
     - name: checkout
       uses: actions/checkout@v4
-      with: 
-        path: g2tmpl
-        submodules: true
 
     - name: build
       run: |
-        cd g2tmpl
-        mkdir build 
-        cd build
-        cmake ${{ matrix.config.options }} -DCMAKE_INSTALL_PREFIX=~/g2tmpl/install ..
-        make -j2 VERBOSE=1
+        cmake -B build ${{ matrix.config.options }} -DCMAKE_INSTALL_PREFIX=~/install
+        cmake --build build --parallel 2 --verbose
     
     - name: test
       run: |
         set -x
-        cd $GITHUB_WORKSPACE/g2tmpl/build
-        ctest --verbose --output-on-failure --rerun-failed
-        make install
+        ctest --test-dir build --verbose --output-on-failure --rerun-failed
+        cmake --install build
         if [ "${{ matrix.config.options }}" = "-DBUILD_SHARED_LIBS=ON" ]; then
-           ls -l ~/g2tmpl/install/lib/lib*.so || exit 1
+           ls -l ~/install/lib/lib*.so || exit 1
         else
-           ls -l ~/g2tmpl/install/lib/lib*.a || exit 1
+           ls -l ~/install/lib/lib*.a || exit 1
         fi

.github/workflows/MacOS.yml

@@ -23,19 +23,13 @@ jobs:
 
     - name: checkout
       uses: actions/checkout@v4
-      with: 
-        path: g2tmpl
 
     - name: build
       run: |
-        cd g2tmpl
-        mkdir build 
-        cd build
-        cmake ..
-        make -j2
+        cmake -B build
+        cmake --build build --parallel 2 --verbose
     
     - name: test
       run: |
-        cd $GITHUB_WORKSPACE/g2tmpl/build
-        ctest --verbose --output-on-failure --rerun-failed 
+        ctest --test-dir build --verbose --output-on-failure --rerun-failed 
 

.github/workflows/Spack.yml

@@ -31,43 +31,24 @@ jobs:
 
     steps:
 
-    - name: checkout-g2tmpl
-      uses: actions/checkout@v4
-      with: 
-        path: g2tmpl
-
-    - name: spack-build-and-test
-      run: |
-        git clone -c feature.manyFiles=true https://github.com/jcsda/spack
-        . spack/share/spack/setup-env.sh
-        spack env create g2tmpl-env
-        spack env activate g2tmpl-env
-        cp $GITHUB_WORKSPACE/g2tmpl/spack/package.py $SPACK_ROOT/var/spack/repos/builtin/packages/g2tmpl/package.py
-        mv $GITHUB_WORKSPACE/g2tmpl $SPACK_ENV/g2tmpl
-        spack develop --no-clone g2tmpl@develop
-        spack add g2tmpl@develop%gcc@11 
-        spack external find cmake gmake
-        spack concretize
-        # Run installation and run CTest suite
-        spack install --verbose --fail-fast --test root
-        # Run 'spack load' to check for obvious errors in setup_run_environment
-        spack load g2tmpl
+    - name: "Build Spack package"
+      uses: NOAA-EMC/ci-test-spack-package@develop
+      with:
+        package-name: g2tmpl
+        custom-recipe: spack/package.py
+        use-repo-cache: true
+        spack-compiler: gcc
+        repo-cache-key-suffix: ${{ matrix.os }}-1
 
   # This job validates the Spack recipe by making sure each cmake build option is represented
   recipe-check:
     runs-on: ubuntu-latest
 
     steps:
-    
-    - name: checkout-g2tmpl
-      uses: actions/checkout@v4
-      with: 
-        path: g2tmpl
 
     - name: recipe-check
-      run: |
-        echo "If this jobs fails, look at the most recently output CMake option below and make sure that option appears in spack/package.py"
-        for opt in $(grep -ioP '^option\(\K(?!(ENABLE_DOCS))[^ ]+' $GITHUB_WORKSPACE/g2tmpl/CMakeLists.txt) ; do
-          echo "Checking for presence of '$opt' CMake option in package.py"
-          grep -cP "define.+\b${opt}\b" $GITHUB_WORKSPACE/g2tmpl/spack/package.py
-        done
+      uses: NOAA-EMC/ci-check-spack-recipe@develop
+      with:
+        recipe-file: package/spack/package.py
+        cmakelists-txt: package/CMakeLists.txt
+        ignore-list: ENABLE_DOCS

.github/workflows/developer.yml

@@ -47,7 +47,7 @@ jobs:
         gcovr --root .. -v  --html-details --exclude ../tests --exclude CMakeFiles --print-summary -o test-coverage.html
 
     - name: upload-test-coverage
-      uses: actions/upload-artifact@v2
+      uses: actions/upload-artifact@v4
       with:
         name: g2tmpl-test-coverage
         path: |