run_jcb_basic_testing.yaml

name: Run JCB basic testing with jcb-gdas changes

on:
  push:
    branches:
      - develop
  pull_request:
    types:
      - opened
      - synchronize
      - reopened

jobs:
  test:
    runs-on: ubuntu-latest

    env:
      JCB_REPO: https://github.com/NOAA-EMC/jcb.git
      JCB_APP_REPO: https://github.com/NOAA-EMC/jcb-gdas.git
      JCB_DEVELOP_BRANCH: develop

    steps:
    - name: Checkout submodule repository
      uses: actions/checkout@v3
      with:
        submodules: true

    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        python-version: '3.x'  # specify your python version

    - name: Determine branch to use
      id: determine-branch
      run: |
        if [ "${{ github.event_name }}" == "pull_request" ]; then
          BRANCH_NAME=${{ github.head_ref }}
        else
          BRANCH_REF=${{ github.ref }}
          BRANCH_NAME=${BRANCH_REF#refs/heads/}
        fi

        if git ls-remote --heads $JCB_REPO $BRANCH_NAME | grep -q "refs/heads/$BRANCH_NAME"; then
          echo "Branch $BRANCH_NAME exists in jcb repo."
          echo "JCB_BRANCH_NAME=$BRANCH_NAME" >> $GITHUB_ENV
        else
          echo "Branch $BRANCH_NAME does not exist in jcb repo. Using develop branch."
          echo "JCB_BRANCH_NAME=develop" >> $GITHUB_ENV
        fi

    - name: Clone jcb repository
      run: |
        mkdir -p empty_hooks
        git config --global core.hooksPath empty_hooks
        git clone --branch ${{ env.JCB_BRANCH_NAME }} --recursive $JCB_REPO jcb_repo
        cd jcb_repo/src/jcb/configuration/apps/gdas
        git checkout ${{ env.BRANCH_NAME }}
        cd -

    - name: Install dependencies
      run: |
        cd jcb_repo
        pip install .[testing]

    - name: Run unit tests
      run: |
        cd $GITHUB_WORKSPACE
        pytest -v